miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13071 5' -50.8 NC_003390.1 + 38205 0.66 0.91549
Target:  5'- aUUCCCuGUGGAC-CCUgGGCucCGUCUg -3'
miRNA:   3'- aGAGGG-UACUUGaGGAgUUGu-GCAGG- -5'
13071 5' -50.8 NC_003390.1 + 7432 0.66 0.908875
Target:  5'- aCUCCgGUGAuCUcuggggccaaucCCUCAGCGuuacguaacuCGUCCa -3'
miRNA:   3'- aGAGGgUACUuGA------------GGAGUUGU----------GCAGG- -5'
13071 5' -50.8 NC_003390.1 + 47438 0.66 0.88729
Target:  5'- aUCUCCUAUGAGCguauggaaccCUUCAGCucUGUCa -3'
miRNA:   3'- -AGAGGGUACUUGa---------GGAGUUGu-GCAGg -5'
13071 5' -50.8 NC_003390.1 + 47186 0.67 0.863198
Target:  5'- aUUCCUAUGg---CCUCuGCACGUCg -3'
miRNA:   3'- aGAGGGUACuugaGGAGuUGUGCAGg -5'
13071 5' -50.8 NC_003390.1 + 31425 0.67 0.858094
Target:  5'- ---gCCAUGAgcugcucuucguccuGCUCCUCGAgGCcgGUCCa -3'
miRNA:   3'- agagGGUACU---------------UGAGGAGUUgUG--CAGG- -5'
13071 5' -50.8 NC_003390.1 + 27006 0.68 0.836786
Target:  5'- aCUCCUuaacGAGCUCCUUGGa--GUCCa -3'
miRNA:   3'- aGAGGGua--CUUGAGGAGUUgugCAGG- -5'
13071 5' -50.8 NC_003390.1 + 19030 0.68 0.808302
Target:  5'- cCUUCCAggccgGAGCUCUggCAGCugGUgCu -3'
miRNA:   3'- aGAGGGUa----CUUGAGGa-GUUGugCAgG- -5'
13071 5' -50.8 NC_003390.1 + 17745 0.69 0.778037
Target:  5'- gUUUCCCAUcGACUaaCUUCGACAgGUUCg -3'
miRNA:   3'- -AGAGGGUAcUUGA--GGAGUUGUgCAGG- -5'
13071 5' -50.8 NC_003390.1 + 16561 0.7 0.736567
Target:  5'- --gCCCAUGAGCUCCUCuaccuucagugccuuACugGUg- -3'
miRNA:   3'- agaGGGUACUUGAGGAGu--------------UGugCAgg -5'
13071 5' -50.8 NC_003390.1 + 42160 0.7 0.734388
Target:  5'- aCUCCCcgaagccucaugcAUGAACUCCUCAccuuccGCGCaUCa -3'
miRNA:   3'- aGAGGG-------------UACUUGAGGAGU------UGUGcAGg -5'
13071 5' -50.8 NC_003390.1 + 28447 1.14 0.001174
Target:  5'- gUCUCCCAUGAACUCCUCAACACGUCCa -3'
miRNA:   3'- -AGAGGGUACUUGAGGAGUUGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.