miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13072 3' -55.7 NC_003390.1 + 33915 0.66 0.66469
Target:  5'- uGCGcGU-CCCGCCC-GCgACGUGgCCUg -3'
miRNA:   3'- -CGUuCAuGGGUGGGaCG-UGUACgGGG- -5'
13072 3' -55.7 NC_003390.1 + 2589 0.66 0.65026
Target:  5'- aGCgGAGUGCCCagcuGCCCaccuugaaguggacUGUGCGU-CCCCa -3'
miRNA:   3'- -CG-UUCAUGGG----UGGG--------------ACGUGUAcGGGG- -5'
13072 3' -55.7 NC_003390.1 + 9193 0.66 0.631351
Target:  5'- uCAAGgcCCCucucaACCCuccugcgcgUGCAgGUGCCCUg -3'
miRNA:   3'- cGUUCauGGG-----UGGG---------ACGUgUACGGGG- -5'
13072 3' -55.7 NC_003390.1 + 11273 0.67 0.586951
Target:  5'- gGCGGGUACCgACCUUGU---UGCCa- -3'
miRNA:   3'- -CGUUCAUGGgUGGGACGuguACGGgg -5'
13072 3' -55.7 NC_003390.1 + 47525 0.67 0.575924
Target:  5'- aCAGGUAgUgGCCCUGCuAC-UGgCCCa -3'
miRNA:   3'- cGUUCAUgGgUGGGACG-UGuACgGGG- -5'
13072 3' -55.7 NC_003390.1 + 7782 0.67 0.564945
Target:  5'- -uGAGUcuGCCCcuaGCCCUGCcccugagucUGCCCCu -3'
miRNA:   3'- cgUUCA--UGGG---UGGGACGugu------ACGGGG- -5'
13072 3' -55.7 NC_003390.1 + 30455 0.68 0.499452
Target:  5'- -gAAGUACUgGCCCUGCAgAagggacgccgcgcUGCCUg -3'
miRNA:   3'- cgUUCAUGGgUGGGACGUgU-------------ACGGGg -5'
13072 3' -55.7 NC_003390.1 + 139 0.68 0.499452
Target:  5'- -gAAGUACUgGCCCUGCAgAagggacgccgcgcUGCCUg -3'
miRNA:   3'- cgUUCAUGGgUGGGACGUgU-------------ACGGGg -5'
13072 3' -55.7 NC_003390.1 + 46350 0.69 0.449384
Target:  5'- aGCAcGGUGCaguucaACUCUGCACcaccUGCCCCc -3'
miRNA:   3'- -CGU-UCAUGgg----UGGGACGUGu---ACGGGG- -5'
13072 3' -55.7 NC_003390.1 + 2839 0.73 0.264155
Target:  5'- gGCu--UGCCCACCUUGCGgaucaugggugcUGUGCCCCu -3'
miRNA:   3'- -CGuucAUGGGUGGGACGU------------GUACGGGG- -5'
13072 3' -55.7 NC_003390.1 + 6854 0.78 0.123224
Target:  5'- aGCAucuGUaGCCUugCCUGCACggGCCCUg -3'
miRNA:   3'- -CGUu--CA-UGGGugGGACGUGuaCGGGG- -5'
13072 3' -55.7 NC_003390.1 + 29149 1.13 0.00035
Target:  5'- gGCAAGUACCCACCCUGCACAUGCCCCu -3'
miRNA:   3'- -CGUUCAUGGGUGGGACGUGUACGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.