miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13074 3' -46.4 NC_003390.1 + 47397 0.66 0.993265
Target:  5'- gGC-UGCugcuGAUGUAACCuaUGGCCu -3'
miRNA:   3'- gUGcAUGuuu-CUGCAUUGGuaACCGG- -5'
13074 3' -46.4 NC_003390.1 + 19844 0.66 0.993265
Target:  5'- aGCGaGCGAggagagcagcugAGAUGUAGCCAUc-GCCa -3'
miRNA:   3'- gUGCaUGUU------------UCUGCAUUGGUAacCGG- -5'
13074 3' -46.4 NC_003390.1 + 33047 0.66 0.992115
Target:  5'- aUAUGUACGAccAUGUGGCUA--GGCCu -3'
miRNA:   3'- -GUGCAUGUUucUGCAUUGGUaaCCGG- -5'
13074 3' -46.4 NC_003390.1 + 4565 0.66 0.992115
Target:  5'- uGCGUGCGGAGuuGcuccaGACCAgaGGUCa -3'
miRNA:   3'- gUGCAUGUUUCugCa----UUGGUaaCCGG- -5'
13074 3' -46.4 NC_003390.1 + 42014 0.66 0.990813
Target:  5'- uCGC-UGCAAAGGCGggGCaCGUUGGg- -3'
miRNA:   3'- -GUGcAUGUUUCUGCauUG-GUAACCgg -5'
13074 3' -46.4 NC_003390.1 + 31845 0.66 0.989349
Target:  5'- aGCGaucuCAGGGugGaguUGGCCGUUGGUg -3'
miRNA:   3'- gUGCau--GUUUCugC---AUUGGUAACCGg -5'
13074 3' -46.4 NC_003390.1 + 29219 0.67 0.985878
Target:  5'- gCAUGUGCAGGGugGguacuuGCCGacucccUGGCa -3'
miRNA:   3'- -GUGCAUGUUUCugCau----UGGUa-----ACCGg -5'
13074 3' -46.4 NC_003390.1 + 15238 0.67 0.981602
Target:  5'- uUAUGgu---GGugGUAACCAUaaacuUGGCCu -3'
miRNA:   3'- -GUGCauguuUCugCAUUGGUA-----ACCGG- -5'
13074 3' -46.4 NC_003390.1 + 1830 0.67 0.979389
Target:  5'- aACGUGCAGGGccuCGUGACgGauuguccgguaggccUGGCCa -3'
miRNA:   3'- gUGCAUGUUUCu--GCAUUGgUa--------------ACCGG- -5'
13074 3' -46.4 NC_003390.1 + 12658 0.68 0.973464
Target:  5'- -uUGUGCGccauugGGGACGcUGACUAcgGGCCa -3'
miRNA:   3'- guGCAUGU------UUCUGC-AUUGGUaaCCGG- -5'
13074 3' -46.4 NC_003390.1 + 37888 0.69 0.958932
Target:  5'- gACgGUGCu--GAUGggGCCAUUGGUCc -3'
miRNA:   3'- gUG-CAUGuuuCUGCauUGGUAACCGG- -5'
13074 3' -46.4 NC_003390.1 + 33916 0.69 0.949929
Target:  5'- gCGCGUcccGCccgcGACGUGGCCugccUGGCCc -3'
miRNA:   3'- -GUGCA---UGuuu-CUGCAUUGGua--ACCGG- -5'
13074 3' -46.4 NC_003390.1 + 33867 0.72 0.861094
Target:  5'- aGCgGUACAGAGAUGUugUUAUcGGCCa -3'
miRNA:   3'- gUG-CAUGUUUCUGCAuuGGUAaCCGG- -5'
13074 3' -46.4 NC_003390.1 + 35804 1.13 0.004186
Target:  5'- uCACGUACAAAGACGUAACCAUUGGCCu -3'
miRNA:   3'- -GUGCAUGUUUCUGCAUUGGUAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.