miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13076 3' -56.6 NC_003390.1 + 32732 0.67 0.55057
Target:  5'- --cGCCUgaUCAGcGGCCUUCAGGACa-- -3'
miRNA:   3'- gccUGGA--AGUC-CUGGAAGUCCUGgga -5'
13076 3' -56.6 NC_003390.1 + 15471 0.67 0.539846
Target:  5'- gCGGauugGCCUaccgUCuAGGcCCUUCAGGACgCCa -3'
miRNA:   3'- -GCC----UGGA----AG-UCCuGGAAGUCCUG-GGa -5'
13076 3' -56.6 NC_003390.1 + 9352 0.67 0.529194
Target:  5'- aGGACCUgauuaagaAGGAUCUggCAGGugCUa -3'
miRNA:   3'- gCCUGGAag------UCCUGGAa-GUCCugGGa -5'
13076 3' -56.6 NC_003390.1 + 43699 0.67 0.51862
Target:  5'- gGGGCCUgUGGGGCCU-CAGGAgCgCUu -3'
miRNA:   3'- gCCUGGAaGUCCUGGAaGUCCUgG-GA- -5'
13076 3' -56.6 NC_003390.1 + 25415 0.68 0.50813
Target:  5'- uCGGAcCCUUCGGGGuCCUUU-GGAcuuCCCa -3'
miRNA:   3'- -GCCU-GGAAGUCCU-GGAAGuCCU---GGGa -5'
13076 3' -56.6 NC_003390.1 + 34330 0.68 0.477229
Target:  5'- uGGcCCUUgAGGGCCguccUAGGACCgCUg -3'
miRNA:   3'- gCCuGGAAgUCCUGGaa--GUCCUGG-GA- -5'
13076 3' -56.6 NC_003390.1 + 36955 0.69 0.427913
Target:  5'- aGGACUUUCGGG-UCUUCcuGACUCUg -3'
miRNA:   3'- gCCUGGAAGUCCuGGAAGucCUGGGA- -5'
13076 3' -56.6 NC_003390.1 + 38258 0.69 0.427913
Target:  5'- aGGGCCUuguagccccugcUCAcccugcaGGCCUUgAGGACCCUg -3'
miRNA:   3'- gCCUGGA------------AGUc------CUGGAAgUCCUGGGA- -5'
13076 3' -56.6 NC_003390.1 + 37860 0.71 0.314313
Target:  5'- gGGACCUUgaucgccCGGGuuGCCUUgGGGGCCUUg -3'
miRNA:   3'- gCCUGGAA-------GUCC--UGGAAgUCCUGGGA- -5'
13076 3' -56.6 NC_003390.1 + 38113 0.74 0.208999
Target:  5'- --cACCUUUuGGACCUUgAGGACCCg -3'
miRNA:   3'- gccUGGAAGuCCUGGAAgUCCUGGGa -5'
13076 3' -56.6 NC_003390.1 + 38231 0.76 0.163973
Target:  5'- aGGGCCcaCAGGGCCUUCcaGGGGCCg- -3'
miRNA:   3'- gCCUGGaaGUCCUGGAAG--UCCUGGga -5'
13076 3' -56.6 NC_003390.1 + 38330 0.82 0.060896
Target:  5'- aGGGCCUUCuGGGCCUUgGGGGCCa- -3'
miRNA:   3'- gCCUGGAAGuCCUGGAAgUCCUGGga -5'
13076 3' -56.6 NC_003390.1 + 37976 0.82 0.059155
Target:  5'- aGGACCcUgGGGACCUUCAGG-CCCg -3'
miRNA:   3'- gCCUGGaAgUCCUGGAAGUCCuGGGa -5'
13076 3' -56.6 NC_003390.1 + 37797 0.91 0.013562
Target:  5'- aGGACCUUgAGGGCCUUCAGGACCa- -3'
miRNA:   3'- gCCUGGAAgUCCUGGAAGUCCUGGga -5'
13076 3' -56.6 NC_003390.1 + 37769 1.08 0.000749
Target:  5'- uCGGACCUUCAGGACCUUCAGGACCCUg -3'
miRNA:   3'- -GCCUGGAAGUCCUGGAAGUCCUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.