miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13076 5' -58.1 NC_003390.1 + 38386 0.66 0.52815
Target:  5'- aGAaGGCCcUCaAGGucuCCAAggugauacUGGCCCCc -3'
miRNA:   3'- aCUcCCGGaAG-UCCu--GGUU--------ACCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 17785 0.66 0.524983
Target:  5'- uUGGGGcCCUUCAGGACCuuaccgucuucacgGcguaAUGGUuuCCCa -3'
miRNA:   3'- -ACUCCcGGAAGUCCUGG--------------U----UACCG--GGG- -5'
13076 5' -58.1 NC_003390.1 + 13603 0.66 0.517621
Target:  5'- --cGGGCagaCAGGGCCcgcuGGUGGCCUUu -3'
miRNA:   3'- acuCCCGgaaGUCCUGG----UUACCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 40842 0.66 0.507177
Target:  5'- cUGAGGGCCaaCgAGGACC--UGGUCa- -3'
miRNA:   3'- -ACUCCCGGaaG-UCCUGGuuACCGGgg -5'
13076 5' -58.1 NC_003390.1 + 3555 0.66 0.486566
Target:  5'- aGAGGGga-UCAGGA----UGGCCCCu -3'
miRNA:   3'- aCUCCCggaAGUCCUgguuACCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 37770 0.67 0.456421
Target:  5'- --cGGaCCUUCAGGACCuucaGGaCCCUg -3'
miRNA:   3'- acuCCcGGAAGUCCUGGuua-CC-GGGG- -5'
13076 5' -58.1 NC_003390.1 + 41247 0.68 0.399327
Target:  5'- cGAGGGUCaggCcaauGGACCAGuucUGGUUCCa -3'
miRNA:   3'- aCUCCCGGaa-Gu---CCUGGUU---ACCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 21923 0.68 0.381335
Target:  5'- cGAGGGUCU--AGGAcauuCCGuccUGGCCCUc -3'
miRNA:   3'- aCUCCCGGAagUCCU----GGUu--ACCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 21342 0.69 0.354536
Target:  5'- aUGcGGGCCUaUCAGGAUCAgcugaaguacaacAUGGaugCCCa -3'
miRNA:   3'- -ACuCCCGGA-AGUCCUGGU-------------UACCg--GGG- -5'
13076 5' -58.1 NC_003390.1 + 37884 0.69 0.322751
Target:  5'- uUGGGGGCCUUgAGcACCug-GGUCgCCa -3'
miRNA:   3'- -ACUCCCGGAAgUCcUGGuuaCCGG-GG- -5'
13076 5' -58.1 NC_003390.1 + 36541 0.7 0.285183
Target:  5'- cUGAGGGCgCUUggUGGGGCUucGcgGGCCCa -3'
miRNA:   3'- -ACUCCCG-GAA--GUCCUGG--UuaCCGGGg -5'
13076 5' -58.1 NC_003390.1 + 30818 0.7 0.284468
Target:  5'- gUGAGGGCUcgaCGGGAacuuaaguaccguCCAGaGGCCCUa -3'
miRNA:   3'- -ACUCCCGGaa-GUCCU-------------GGUUaCCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 4128 0.71 0.273913
Target:  5'- aGAGGcGUCUaagcugugcaccaagUUAGGAgCAAUGGCaCCCu -3'
miRNA:   3'- aCUCC-CGGA---------------AGUCCUgGUUACCG-GGG- -5'
13076 5' -58.1 NC_003390.1 + 10793 0.71 0.251153
Target:  5'- -aAGcGCCgUCGGGGCCAggGGCUCCu -3'
miRNA:   3'- acUCcCGGaAGUCCUGGUuaCCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 43371 0.71 0.240369
Target:  5'- cGAGGGCCUUacugagaCGGGAguaguuuaucucCCAGUgaguuguaacacaccGGCCCCc -3'
miRNA:   3'- aCUCCCGGAA-------GUCCU------------GGUUA---------------CCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 34324 0.72 0.23178
Target:  5'- uUGAGGGCCguccUAGGACCGcugcggaGUGuuCCCCg -3'
miRNA:   3'- -ACUCCCGGaa--GUCCUGGU-------UACc-GGGG- -5'
13076 5' -58.1 NC_003390.1 + 35196 0.72 0.22054
Target:  5'- -aGGGGCCcUguGGaauuGCCGggGGCCCCu -3'
miRNA:   3'- acUCCCGGaAguCC----UGGUuaCCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 38223 0.78 0.086421
Target:  5'- -cAGGGCCUUCcaGGGGCCGAUGGUgCa -3'
miRNA:   3'- acUCCCGGAAG--UCCUGGUUACCGgGg -5'
13076 5' -58.1 NC_003390.1 + 37982 0.78 0.086421
Target:  5'- cUGGGGaCCUUCAGGcCCGGUaGCCCCa -3'
miRNA:   3'- -ACUCCcGGAAGUCCuGGUUAcCGGGG- -5'
13076 5' -58.1 NC_003390.1 + 38327 0.8 0.056147
Target:  5'- uUGAGGGCCUUCuGGGCCuugggGGCCa- -3'
miRNA:   3'- -ACUCCCGGAAGuCCUGGuua--CCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.