miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13077 3' -51.7 NC_003390.1 + 30572 0.66 0.873546
Target:  5'- aCCAaCAGCACaUGGGU--CCUUGGu- -3'
miRNA:   3'- -GGUaGUCGUGgACCCAauGGAACUcc -5'
13077 3' -51.7 NC_003390.1 + 39762 0.66 0.873546
Target:  5'- cUCAUUAGCACUUccaacgacgacGGGcUGCCUUaccccGAGGu -3'
miRNA:   3'- -GGUAGUCGUGGA-----------CCCaAUGGAA-----CUCC- -5'
13077 3' -51.7 NC_003390.1 + 10048 0.66 0.860327
Target:  5'- gCAUCgAGCuCCUGcucGGUUAuagcugcaccuucguCCUUGAGGa -3'
miRNA:   3'- gGUAG-UCGuGGAC---CCAAU---------------GGAACUCC- -5'
13077 3' -51.7 NC_003390.1 + 38306 0.66 0.85692
Target:  5'- gCCAgUAuCACCUuGGagACCUUGAGGg -3'
miRNA:   3'- -GGUaGUcGUGGAcCCaaUGGAACUCC- -5'
13077 3' -51.7 NC_003390.1 + 37890 0.67 0.820754
Target:  5'- gCCuUgAGCACCUGGGUcGCCa----- -3'
miRNA:   3'- -GGuAgUCGUGGACCCAaUGGaacucc -5'
13077 3' -51.7 NC_003390.1 + 20254 0.68 0.791392
Target:  5'- gCCA-CAGCAgCCUGGauGUUGgCUggGAGGg -3'
miRNA:   3'- -GGUaGUCGU-GGACC--CAAUgGAa-CUCC- -5'
13077 3' -51.7 NC_003390.1 + 43243 0.68 0.780212
Target:  5'- gCAUaCAGCAucgaaucCCUGGGUcugagcUACCgcGAGGa -3'
miRNA:   3'- gGUA-GUCGU-------GGACCCA------AUGGaaCUCC- -5'
13077 3' -51.7 NC_003390.1 + 34962 0.68 0.760448
Target:  5'- uCC-UCAGCAUCUGGuGUUACU--GAGa -3'
miRNA:   3'- -GGuAGUCGUGGACC-CAAUGGaaCUCc -5'
13077 3' -51.7 NC_003390.1 + 32572 0.69 0.739102
Target:  5'- aCAUCcGCGugaCUGGGUUGCagcaggUGAGGu -3'
miRNA:   3'- gGUAGuCGUg--GACCCAAUGga----ACUCC- -5'
13077 3' -51.7 NC_003390.1 + 37782 0.69 0.717298
Target:  5'- aCCuUCAGgAcCCUGaGG--ACCUUGAGGg -3'
miRNA:   3'- -GGuAGUCgU-GGAC-CCaaUGGAACUCC- -5'
13077 3' -51.7 NC_003390.1 + 38153 0.71 0.571111
Target:  5'- aCCAUCGGCcCCUGGaagGCCcUGuGGg -3'
miRNA:   3'- -GGUAGUCGuGGACCcaaUGGaACuCC- -5'
13077 3' -51.7 NC_003390.1 + 38006 0.72 0.537842
Target:  5'- cCCAUCAGCACCgucGUUACCUgGAu- -3'
miRNA:   3'- -GGUAGUCGUGGaccCAAUGGAaCUcc -5'
13077 3' -51.7 NC_003390.1 + 33397 0.72 0.516034
Target:  5'- uCCAUgGGCugUUGGG-UACCUUGGc- -3'
miRNA:   3'- -GGUAgUCGugGACCCaAUGGAACUcc -5'
13077 3' -51.7 NC_003390.1 + 37863 0.74 0.413379
Target:  5'- aCCuugauCGCCcGGGUUGCCUUGGGGg -3'
miRNA:   3'- -GGuagucGUGGaCCCAAUGGAACUCC- -5'
13077 3' -51.7 NC_003390.1 + 38234 0.8 0.19082
Target:  5'- uCCAUCGGCuCCUGGGaguCCcUGAGGg -3'
miRNA:   3'- -GGUAGUCGuGGACCCaauGGaACUCC- -5'
13077 3' -51.7 NC_003390.1 + 37836 1.03 0.00593
Target:  5'- aCCGUCAGCcCCUGGGUUACCUUGGGGa -3'
miRNA:   3'- -GGUAGUCGuGGACCCAAUGGAACUCC- -5'
13077 3' -51.7 NC_003390.1 + 37952 1.14 0.001027
Target:  5'- gCCAUCAGCACCUGGGUUACCUUGAGGa -3'
miRNA:   3'- -GGUAGUCGUGGACCCAAUGGAACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.