miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13081 5' -46.7 NC_003390.1 + 33886 0.66 0.990356
Target:  5'- aAUCCUAagGACAGCacacagcgguacagaGAUGUUguuAUCGGCc -3'
miRNA:   3'- gUAGGGU--UUGUUG---------------CUACAGu--UAGCCG- -5'
13081 5' -46.7 NC_003390.1 + 35910 0.66 0.989769
Target:  5'- aCAUaCCCu--CAuCGAUG-UAAUCGGCc -3'
miRNA:   3'- -GUA-GGGuuuGUuGCUACaGUUAGCCG- -5'
13081 5' -46.7 NC_003390.1 + 26199 0.67 0.982257
Target:  5'- cCAUCCUggGCGACGAUGgacugaAGUCc-- -3'
miRNA:   3'- -GUAGGGuuUGUUGCUACag----UUAGccg -5'
13081 5' -46.7 NC_003390.1 + 40546 0.67 0.975519
Target:  5'- aAUCUCAucaccGGCAACGGUGUaaaGAaagacccgccccuuaUCGGCg -3'
miRNA:   3'- gUAGGGU-----UUGUUGCUACAg--UU---------------AGCCG- -5'
13081 5' -46.7 NC_003390.1 + 28814 0.67 0.974336
Target:  5'- cCGUCUCGAcuaACGACGAaacgGUCAAgCGGa -3'
miRNA:   3'- -GUAGGGUU---UGUUGCUa---CAGUUaGCCg -5'
13081 5' -46.7 NC_003390.1 + 40891 0.68 0.967793
Target:  5'- cCAUCCCAAGCAACaccaccaAUGUUGGagagaCGGCc -3'
miRNA:   3'- -GUAGGGUUUGUUGc------UACAGUUa----GCCG- -5'
13081 5' -46.7 NC_003390.1 + 44910 0.68 0.95589
Target:  5'- gAUCCUAucugcacauucAACAACGAUGUgGGUacaucacaGGCa -3'
miRNA:   3'- gUAGGGU-----------UUGUUGCUACAgUUAg-------CCG- -5'
13081 5' -46.7 NC_003390.1 + 17191 0.72 0.855021
Target:  5'- -uUCCCAGACcuuguagcccagGGgGAUGUCGgcGUUGGCa -3'
miRNA:   3'- guAGGGUUUG------------UUgCUACAGU--UAGCCG- -5'
13081 5' -46.7 NC_003390.1 + 35742 0.73 0.784269
Target:  5'- -uUCCCAGACgGACGAUGUCugauaauguugcAUCGGa -3'
miRNA:   3'- guAGGGUUUG-UUGCUACAGu-----------UAGCCg -5'
13081 5' -46.7 NC_003390.1 + 44006 1.13 0.004268
Target:  5'- cCAUCCCAAACAACGAUGUCAAUCGGCc -3'
miRNA:   3'- -GUAGGGUUUGUUGCUACAGUUAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.