Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13082 | 3' | -59.7 | NC_003390.1 | + | 2083 | 0.66 | 0.389875 |
Target: 5'- gAGGGCCUacGCAucaUCCACCGucuacGGGCaGCAa -3' miRNA: 3'- -UUUCGGA--CGU---AGGUGGU-----CCCGcCGUg -5' |
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13082 | 3' | -59.7 | NC_003390.1 | + | 38275 | 0.67 | 0.337873 |
Target: 5'- cGGAGCCcaGgGUCCAcagggaauCCAGGGCGaGCAg -3' miRNA: 3'- -UUUCGGa-CgUAGGU--------GGUCCCGC-CGUg -5' |
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13082 | 3' | -59.7 | NC_003390.1 | + | 9075 | 0.67 | 0.309179 |
Target: 5'- aGGAGCCgucuuggccuugaacUGCAUUguCCAGGGCaccuGCACg -3' miRNA: 3'- -UUUCGG---------------ACGUAGguGGUCCCGc---CGUG- -5' |
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13082 | 3' | -59.7 | NC_003390.1 | + | 42459 | 0.71 | 0.18619 |
Target: 5'- cGAGGCCUGCcagagCUGCCAGGG-GGCu- -3' miRNA: 3'- -UUUCGGACGua---GGUGGUCCCgCCGug -5' |
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13082 | 3' | -59.7 | NC_003390.1 | + | 44061 | 1.07 | 0.000279 |
Target: 5'- cAAAGCCUGCAUCCACCAGGGCGGCACa -3' miRNA: 3'- -UUUCGGACGUAGGUGGUCCCGCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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