miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 5' -58.4 NC_003401.1 + 188 1.06 0.002198
Target:  5'- cACAAGCACGCACACGCCGUCCCCUGUc -3'
miRNA:   3'- -UGUUCGUGCGUGUGCGGCAGGGGACA- -5'
13091 5' -58.4 NC_003401.1 + 220 0.7 0.559057
Target:  5'- aGCGAGCAgGCAgGCaGCCGUaCCCgGUg -3'
miRNA:   3'- -UGUUCGUgCGUgUG-CGGCAgGGGaCA- -5'
13091 5' -58.4 NC_003401.1 + 272 0.66 0.78809
Target:  5'- aGCAAGCAgGCcagcgagcaaGCAgGCCuacuGUCCCCUc- -3'
miRNA:   3'- -UGUUCGUgCG----------UGUgCGG----CAGGGGAca -5'
13091 5' -58.4 NC_003401.1 + 336 0.66 0.78809
Target:  5'- aGCAAGCAgGCcagcgagcaaGCAgGCCuacuGUCCCCUc- -3'
miRNA:   3'- -UGUUCGUgCG----------UGUgCGG----CAGGGGAca -5'
13091 5' -58.4 NC_003401.1 + 8913 0.67 0.695255
Target:  5'- cGCAGGCGCccuGUggcggcgaccggcugACGCGCCGUCgUCUGg -3'
miRNA:   3'- -UGUUCGUG---CG---------------UGUGCGGCAGgGGACa -5'
13091 5' -58.4 NC_003401.1 + 14513 0.68 0.660795
Target:  5'- gACGGGCuuGCggucGCGCGCCGUCCacaUGg -3'
miRNA:   3'- -UGUUCGugCG----UGUGCGGCAGGgg-ACa -5'
13091 5' -58.4 NC_003401.1 + 14693 0.69 0.619934
Target:  5'- cACGuuCACGCACACgcugguGCCGUCCUCgGUu -3'
miRNA:   3'- -UGUucGUGCGUGUG------CGGCAGGGGaCA- -5'
13091 5' -58.4 NC_003401.1 + 14870 0.69 0.599528
Target:  5'- uACucGUGCGCGCGCGCCacgCCCCg-- -3'
miRNA:   3'- -UGuuCGUGCGUGUGCGGca-GGGGaca -5'
13091 5' -58.4 NC_003401.1 + 17806 0.75 0.279125
Target:  5'- cCGAGCGCGCGC-CGCCGUUCUCg-- -3'
miRNA:   3'- uGUUCGUGCGUGuGCGGCAGGGGaca -5'
13091 5' -58.4 NC_003401.1 + 17913 0.69 0.579217
Target:  5'- uGCAAG-GCGUccguucACACGCUGUCCCCg-- -3'
miRNA:   3'- -UGUUCgUGCG------UGUGCGGCAGGGGaca -5'
13091 5' -58.4 NC_003401.1 + 20613 0.66 0.778885
Target:  5'- gGCcAGCccuACGCugGCGCC-UCCCCcGa -3'
miRNA:   3'- -UGuUCG---UGCGugUGCGGcAGGGGaCa -5'
13091 5' -58.4 NC_003401.1 + 23314 0.68 0.650593
Target:  5'- cACAAGCACGCccccgcccuGCAC-CCGgcUCCCCgagGUc -3'
miRNA:   3'- -UGUUCGUGCG---------UGUGcGGC--AGGGGa--CA- -5'
13091 5' -58.4 NC_003401.1 + 27703 0.66 0.73792
Target:  5'- cGCGGGCcccgguggaggccaGCGCACA-GCCGgCCCCcGUg -3'
miRNA:   3'- -UGUUCG--------------UGCGUGUgCGGCaGGGGaCA- -5'
13091 5' -58.4 NC_003401.1 + 42319 0.72 0.443809
Target:  5'- gGCGAGCAUGCACAUgaaGCUGUCCgCg-- -3'
miRNA:   3'- -UGUUCGUGCGUGUG---CGGCAGGgGaca -5'
13091 5' -58.4 NC_003401.1 + 44878 0.67 0.711283
Target:  5'- --cAGCGCGCACACuauggGCUGg-CCCUGUu -3'
miRNA:   3'- uguUCGUGCGUGUG-----CGGCagGGGACA- -5'
13091 5' -58.4 NC_003401.1 + 52572 0.69 0.599528
Target:  5'- --uAGUACGCGCcUGCCGggagaaacaUCCCCUGa -3'
miRNA:   3'- uguUCGUGCGUGuGCGGC---------AGGGGACa -5'
13091 5' -58.4 NC_003401.1 + 53925 0.76 0.260004
Target:  5'- gACAGGCGCGuCAgGCGCCucCCCCUGa -3'
miRNA:   3'- -UGUUCGUGC-GUgUGCGGcaGGGGACa -5'
13091 5' -58.4 NC_003401.1 + 64694 0.66 0.778885
Target:  5'- -aAGGCGCGC-CAU-CCGucUCCCCUGg -3'
miRNA:   3'- ugUUCGUGCGuGUGcGGC--AGGGGACa -5'
13091 5' -58.4 NC_003401.1 + 71622 0.69 0.589357
Target:  5'- cCAGGUugGgCACAcCGaCCGUCCCCg-- -3'
miRNA:   3'- uGUUCGugC-GUGU-GC-GGCAGGGGaca -5'
13091 5' -58.4 NC_003401.1 + 76780 0.72 0.408402
Target:  5'- -gAGGUACGCGCACGCauCGcCCCUUGg -3'
miRNA:   3'- ugUUCGUGCGUGUGCG--GCaGGGGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.