miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13092 5' -57.3 NC_003401.1 + 104288 0.66 0.811932
Target:  5'- gAAGCAGGCgCUagacgaACUcgcgCCCCUCAGgGu -3'
miRNA:   3'- gUUCGUCCG-GA------UGAca--GGGGAGUCgU- -5'
13092 5' -57.3 NC_003401.1 + 30986 0.66 0.802961
Target:  5'- aCAcGCAGGCCgcGCUGUgCCuCCUCAaCGg -3'
miRNA:   3'- -GUuCGUCCGGa-UGACA-GG-GGAGUcGU- -5'
13092 5' -57.3 NC_003401.1 + 74737 0.66 0.784546
Target:  5'- gAAGCAGGCagagaUGUgcaccgccgCCCUUCGGCAg -3'
miRNA:   3'- gUUCGUCCGgaug-ACA---------GGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 603 0.88 0.043741
Target:  5'- uCAGGCAGGCgUACcGUCCCCUUAGCAa -3'
miRNA:   3'- -GUUCGUCCGgAUGaCAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 133318 0.88 0.043741
Target:  5'- uCAGGCAGGCgUACcGUCCCCUUAGCAa -3'
miRNA:   3'- -GUUCGUCCGgAUGaCAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 357 0.91 0.028838
Target:  5'- -cAGCAGcCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- guUCGUCcGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 133092 0.91 0.028838
Target:  5'- -cAGCAGcCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- guUCGUCcGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 133290 0.95 0.013166
Target:  5'- gCAAGCAGcCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- -GUUCGUCcGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 575 0.95 0.013166
Target:  5'- gCAAGCAGcCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- -GUUCGUCcGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 294 1.05 0.002715
Target:  5'- nAAGCAGGCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- gUUCGUCCGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 133029 1.05 0.002715
Target:  5'- nAAGCAGGCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- gUUCGUCCGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 133054 1.08 0.001728
Target:  5'- gCAAGCAGGCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- -GUUCGUCCGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 255 1.08 0.001728
Target:  5'- gCAAGCAGGCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- -GUUCGUCCGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 319 1.08 0.001728
Target:  5'- gCAAGCAGGCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- -GUUCGUCCGGAUGACAGGGGAGUCGU- -5'
13092 5' -57.3 NC_003401.1 + 132990 1.08 0.001728
Target:  5'- gCAAGCAGGCCUACUGUCCCCUCAGCAa -3'
miRNA:   3'- -GUUCGUCCGGAUGACAGGGGAGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.