miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 3' -57.3 NC_003401.1 + 96395 0.76 0.253343
Target:  5'- uGGGCGGGCAAaggcucgucgcGCAGGCUGGaCGGGCAu -3'
miRNA:   3'- gCUCGUUCGUU-----------CGUCCGGUC-GCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 21828 0.66 0.807278
Target:  5'- uGGGCGGGgccgaccaCAGGCGcGGCCcggcuguuAGCGAGUAa -3'
miRNA:   3'- gCUCGUUC--------GUUCGU-CCGG--------UCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 120701 0.66 0.801851
Target:  5'- -uGGCAAGCGccacugguucuuggcAGCcGGCCGGUGGGgAu -3'
miRNA:   3'- gcUCGUUCGU---------------UCGuCCGGUCGCUCgU- -5'
13093 3' -57.3 NC_003401.1 + 16177 0.66 0.770076
Target:  5'- aCGGGUucacCGGGguGGCCAGCG-GCc -3'
miRNA:   3'- -GCUCGuuc-GUUCguCCGGUCGCuCGu -5'
13093 3' -57.3 NC_003401.1 + 12803 0.67 0.720779
Target:  5'- aCGAGCAGGCAacggacgaccuAGCGGcGCCccAGCu-GCAg -3'
miRNA:   3'- -GCUCGUUCGU-----------UCGUC-CGG--UCGcuCGU- -5'
13093 3' -57.3 NC_003401.1 + 27591 0.68 0.690175
Target:  5'- uCGAG-GGGCGGGCAcGcGCCAGCGcggggGGCAg -3'
miRNA:   3'- -GCUCgUUCGUUCGU-C-CGGUCGC-----UCGU- -5'
13093 3' -57.3 NC_003401.1 + 23635 0.69 0.617435
Target:  5'- aCGGGCGccGCGAGC-GGCCGGCaGGUg -3'
miRNA:   3'- -GCUCGUu-CGUUCGuCCGGUCGcUCGu -5'
13093 3' -57.3 NC_003401.1 + 109853 0.7 0.562562
Target:  5'- gGGGCAAaCGGGUAGGCCAGUcucucuaguuugugGAGCc -3'
miRNA:   3'- gCUCGUUcGUUCGUCCGGUCG--------------CUCGu -5'
13093 3' -57.3 NC_003401.1 + 47482 0.71 0.515039
Target:  5'- uGAGCGacGGCgAAGguGGCagagaccucgCGGCGAGCAu -3'
miRNA:   3'- gCUCGU--UCG-UUCguCCG----------GUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 9440 0.71 0.495304
Target:  5'- cCGuGGCAGGCGGGCAacaauGGCCAGgGAacucGCAg -3'
miRNA:   3'- -GC-UCGUUCGUUCGU-----CCGGUCgCU----CGU- -5'
13093 3' -57.3 NC_003401.1 + 84048 0.74 0.336695
Target:  5'- uGGGCAAGgGGGCGGGC-AGCG-GCAu -3'
miRNA:   3'- gCUCGUUCgUUCGUCCGgUCGCuCGU- -5'
13093 3' -57.3 NC_003401.1 + 394 0.88 0.043991
Target:  5'- ----nAAGCAAGCAGGCCAGCGAGCAg -3'
miRNA:   3'- gcucgUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 419 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 459 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 499 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 539 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133134 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAg -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133174 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133214 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 132402 0.66 0.797286
Target:  5'- cCGGGCGcaagauGGCGgccgcggcccggcGGCGGcGCCGGcCGGGCGc -3'
miRNA:   3'- -GCUCGU------UCGU-------------UCGUC-CGGUC-GCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.