Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13094 | 5' | -57.6 | NC_003401.1 | + | 133564 | 0.77 | 0.232108 |
Target: 5'- uAGCaAGCAAGCAAGCAaGCCAGCa-- -3' miRNA: 3'- -UCGcUCGUUCGUUCGUcCGGUCGcuc -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 133500 | 0.67 | 0.724406 |
Target: 5'- uGCGuGCGAGgGcGUccgaGGGCCAGaCGAGg -3' miRNA: 3'- uCGCuCGUUCgUuCG----UCCGGUC-GCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 133256 | 1.07 | 0.001711 |
Target: 5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3' miRNA: 3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 133216 | 1.07 | 0.001711 |
Target: 5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3' miRNA: 3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 133176 | 1.07 | 0.001711 |
Target: 5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3' miRNA: 3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 133136 | 1.07 | 0.001711 |
Target: 5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3' miRNA: 3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 133092 | 0.8 | 0.15218 |
Target: 5'- cAGC-AGCccuacuguccccucAGCAAGCAGGCCAGCGAGc -3' miRNA: 3'- -UCGcUCGu-------------UCGUUCGUCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 132996 | 0.86 | 0.054752 |
Target: 5'- cAGCGAGCaagcaGgccuacuguccccucAGCAAGCAGGCCAGCGAGc -3' miRNA: 3'- -UCGCUCG-----U---------------UCGUUCGUCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 132766 | 0.67 | 0.724406 |
Target: 5'- cGGCGuGgGGGaGGGgAGGCCGGCGGa -3' miRNA: 3'- -UCGCuCgUUCgUUCgUCCGGUCGCUc -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 132507 | 0.77 | 0.220864 |
Target: 5'- gGGCG-GCGGccGCGGGCccGGGCCGGCGGGg -3' miRNA: 3'- -UCGCuCGUU--CGUUCG--UCCGGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 132451 | 0.66 | 0.754155 |
Target: 5'- cGGCG-GCGcccGGCGcGCGGGCCcGgGGGg -3' miRNA: 3'- -UCGCuCGU---UCGUuCGUCCGGuCgCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 121633 | 0.7 | 0.549117 |
Target: 5'- cGGCGGuGCAGGUGAGUggGGGCCGGgGuGu -3' miRNA: 3'- -UCGCU-CGUUCGUUCG--UCCGGUCgCuC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 119023 | 0.72 | 0.442017 |
Target: 5'- cAGCGuGCAccgaGGCGAGgAGGgCGGCGAu -3' miRNA: 3'- -UCGCuCGU----UCGUUCgUCCgGUCGCUc -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 106876 | 0.68 | 0.673309 |
Target: 5'- cGGCGuuuGCGGGUuuGGCGGGuUCGGUGAGc -3' miRNA: 3'- -UCGCu--CGUUCGu-UCGUCC-GGUCGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 106119 | 0.68 | 0.673309 |
Target: 5'- uGGCGGGCcuGCAaauuucgagAGCAGGCCGuuuuacGUGAu -3' miRNA: 3'- -UCGCUCGuuCGU---------UCGUCCGGU------CGCUc -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 96392 | 0.74 | 0.32466 |
Target: 5'- gAGUGGGCGGGCAAaggcucgucgcGCAGGCUGGaCGGGc -3' miRNA: 3'- -UCGCUCGUUCGUU-----------CGUCCGGUC-GCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 92320 | 0.66 | 0.754155 |
Target: 5'- -aCGA-CAGGCuaGAGCAGGCCGGgaCGGGg -3' miRNA: 3'- ucGCUcGUUCG--UUCGUCCGGUC--GCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 86874 | 0.66 | 0.750241 |
Target: 5'- uGCGAGUuugccaGGGCAGauuuGCAGGCCcugcagaaaacauGCGAGa -3' miRNA: 3'- uCGCUCG------UUCGUU----CGUCCGGu------------CGCUC- -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 84046 | 0.74 | 0.32466 |
Target: 5'- cGUGGGCAAGgGGGCGGGC-AGCGGc -3' miRNA: 3'- uCGCUCGUUCgUUCGUCCGgUCGCUc -5' |
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13094 | 5' | -57.6 | NC_003401.1 | + | 64314 | 0.66 | 0.763861 |
Target: 5'- cGGC-AGCAuccuGgGAGU-GGCCGGCGGGg -3' miRNA: 3'- -UCGcUCGUu---CgUUCGuCCGGUCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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