miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13094 5' -57.6 NC_003401.1 + 84046 0.74 0.32466
Target:  5'- cGUGGGCAAGgGGGCGGGC-AGCGGc -3'
miRNA:   3'- uCGCUCGUUCgUUCGUCCGgUCGCUc -5'
13094 5' -57.6 NC_003401.1 + 96392 0.74 0.32466
Target:  5'- gAGUGGGCGGGCAAaggcucgucgcGCAGGCUGGaCGGGc -3'
miRNA:   3'- -UCGCUCGUUCGUU-----------CGUCCGGUC-GCUC- -5'
13094 5' -57.6 NC_003401.1 + 133564 0.77 0.232108
Target:  5'- uAGCaAGCAAGCAAGCAaGCCAGCa-- -3'
miRNA:   3'- -UCGcUCGUUCGUUCGUcCGGUCGcuc -5'
13094 5' -57.6 NC_003401.1 + 849 0.77 0.232108
Target:  5'- uAGCaAGCAAGCAAGCAaGCCAGCa-- -3'
miRNA:   3'- -UCGcUCGUUCGUUCGUcCGGUCGcuc -5'
13094 5' -57.6 NC_003401.1 + 132507 0.77 0.220864
Target:  5'- gGGCG-GCGGccGCGGGCccGGGCCGGCGGGg -3'
miRNA:   3'- -UCGCuCGUU--CGUUCG--UCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 133092 0.8 0.15218
Target:  5'- cAGC-AGCccuacuguccccucAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGcUCGu-------------UCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 357 0.8 0.15218
Target:  5'- cAGC-AGCccuacuguccccucAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGcUCGu-------------UCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 132996 0.86 0.054752
Target:  5'- cAGCGAGCaagcaGgccuacuguccccucAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCG-----U---------------UCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 261 0.86 0.054752
Target:  5'- cAGCGAGCaagcaGgccuacuguccccucAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCG-----U---------------UCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 396 0.88 0.043421
Target:  5'- ----nGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- ucgcuCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 501 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 541 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 133136 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 133176 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 133216 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 133256 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 421 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 461 1.07 0.001711
Target:  5'- cAGCGAGCAAGCAAGCAGGCCAGCGAGc -3'
miRNA:   3'- -UCGCUCGUUCGUUCGUCCGGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.