Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13095 | 3' | -58.4 | NC_003401.1 | + | 119803 | 0.7 | 0.445739 |
Target: 5'- aGGCGGCgCAGCGGCaCCgagGCUAaacagcgcGCAGg -3' miRNA: 3'- aUCGUCGgGUCGUCG-GGa--UGAU--------CGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 23697 | 0.66 | 0.719959 |
Target: 5'- aUGGCGGaCCGGCAGCgCCgguuggACgcGGCGGa -3' miRNA: 3'- -AUCGUCgGGUCGUCG-GGa-----UGa-UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 19597 | 0.66 | 0.689205 |
Target: 5'- -cGCGGUUCGGUGGCCCggcgaaACUgcGGCAGc -3' miRNA: 3'- auCGUCGGGUCGUCGGGa-----UGA--UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 88984 | 0.68 | 0.595248 |
Target: 5'- cAGCAGCuauuuucaucuCUAGCGcCgCCUACUAGCGGa -3' miRNA: 3'- aUCGUCG-----------GGUCGUcG-GGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 125699 | 0.68 | 0.584841 |
Target: 5'- aGGCGGCCauCAGC-GCCCUGggaAGCGGg -3' miRNA: 3'- aUCGUCGG--GUCGuCGGGAUga-UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 126025 | 0.68 | 0.57447 |
Target: 5'- cGGUGGCCCGGCAGUCaaaguuUUGGCAc -3' miRNA: 3'- aUCGUCGGGUCGUCGGgau---GAUCGUc -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 79586 | 0.69 | 0.553863 |
Target: 5'- aAGCGGCCCGGgAGCCau----GCAGa -3' miRNA: 3'- aUCGUCGGGUCgUCGGgaugauCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 9364 | 0.69 | 0.52339 |
Target: 5'- --cUAGCgCCGGC-GCCCUACUGGcCGGg -3' miRNA: 3'- aucGUCG-GGUCGuCGGGAUGAUC-GUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 389 | 0.84 | 0.060359 |
Target: 5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3' miRNA: 3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 133124 | 0.84 | 0.060359 |
Target: 5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3' miRNA: 3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 654 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 694 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 734 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 774 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 814 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 133369 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 133409 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 133449 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 133489 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 105846 | 0.66 | 0.709773 |
Target: 5'- cAGUAGCCCgugGGCuGUCCgUACUcguacGGCGGg -3' miRNA: 3'- aUCGUCGGG---UCGuCGGG-AUGA-----UCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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