miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13095 3' -58.4 NC_003401.1 + 119803 0.7 0.445739
Target:  5'- aGGCGGCgCAGCGGCaCCgagGCUAaacagcgcGCAGg -3'
miRNA:   3'- aUCGUCGgGUCGUCG-GGa--UGAU--------CGUC- -5'
13095 3' -58.4 NC_003401.1 + 23697 0.66 0.719959
Target:  5'- aUGGCGGaCCGGCAGCgCCgguuggACgcGGCGGa -3'
miRNA:   3'- -AUCGUCgGGUCGUCG-GGa-----UGa-UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 19597 0.66 0.689205
Target:  5'- -cGCGGUUCGGUGGCCCggcgaaACUgcGGCAGc -3'
miRNA:   3'- auCGUCGGGUCGUCGGGa-----UGA--UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 88984 0.68 0.595248
Target:  5'- cAGCAGCuauuuucaucuCUAGCGcCgCCUACUAGCGGa -3'
miRNA:   3'- aUCGUCG-----------GGUCGUcG-GGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 125699 0.68 0.584841
Target:  5'- aGGCGGCCauCAGC-GCCCUGggaAGCGGg -3'
miRNA:   3'- aUCGUCGG--GUCGuCGGGAUga-UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 126025 0.68 0.57447
Target:  5'- cGGUGGCCCGGCAGUCaaaguuUUGGCAc -3'
miRNA:   3'- aUCGUCGGGUCGUCGGgau---GAUCGUc -5'
13095 3' -58.4 NC_003401.1 + 79586 0.69 0.553863
Target:  5'- aAGCGGCCCGGgAGCCau----GCAGa -3'
miRNA:   3'- aUCGUCGGGUCgUCGGgaugauCGUC- -5'
13095 3' -58.4 NC_003401.1 + 9364 0.69 0.52339
Target:  5'- --cUAGCgCCGGC-GCCCUACUGGcCGGg -3'
miRNA:   3'- aucGUCG-GGUCGuCGGGAUGAUC-GUC- -5'
13095 3' -58.4 NC_003401.1 + 389 0.84 0.060359
Target:  5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3'
miRNA:   3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5'
13095 3' -58.4 NC_003401.1 + 133124 0.84 0.060359
Target:  5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3'
miRNA:   3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5'
13095 3' -58.4 NC_003401.1 + 654 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 694 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 734 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 774 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 814 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133369 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133409 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133449 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133489 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 105846 0.66 0.709773
Target:  5'- cAGUAGCCCgugGGCuGUCCgUACUcguacGGCGGg -3'
miRNA:   3'- aUCGUCGGG---UCGuCGGG-AUGA-----UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.