miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13095 3' -58.4 NC_003401.1 + 582 0.73 0.319562
Target:  5'- uUAGCaAGCa-AGCAGCCCUACUguccccucagcaAGCAGg -3'
miRNA:   3'- -AUCG-UCGggUCGUCGGGAUGA------------UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133297 0.73 0.319562
Target:  5'- uUAGCaAGCa-AGCAGCCCUACUguccccucagcaAGCAGg -3'
miRNA:   3'- -AUCG-UCGggUCGUCGGGAUGA------------UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 1057 0.73 0.304187
Target:  5'- uUAGCAacaaaCCAGCAGCCCUACUguuuuucAGCAa -3'
miRNA:   3'- -AUCGUcg---GGUCGUCGGGAUGA-------UCGUc -5'
13095 3' -58.4 NC_003401.1 + 133709 0.75 0.245349
Target:  5'- cGGguGCCCGGCGGUCCg---GGCGGg -3'
miRNA:   3'- aUCguCGGGUCGUCGGGaugaUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133344 0.79 0.125656
Target:  5'- ----nGCCCAGCAGCCCUACUaucaagccaucaGGCAGg -3'
miRNA:   3'- aucguCGGGUCGUCGGGAUGA------------UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 629 0.79 0.125656
Target:  5'- ----nGCCCAGCAGCCCUACUaucaagccaucaGGCAGg -3'
miRNA:   3'- aucguCGGGUCGUCGGGAUGA------------UCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133604 0.81 0.093512
Target:  5'- cAGCuGCaCAGCAGCCCUAgUAGCAGg -3'
miRNA:   3'- aUCGuCGgGUCGUCGGGAUgAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 889 0.81 0.093512
Target:  5'- cAGCuGCaCAGCAGCCCUAgUAGCAGg -3'
miRNA:   3'- aUCGuCGgGUCGUCGGGAUgAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133124 0.84 0.060359
Target:  5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3'
miRNA:   3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5'
13095 3' -58.4 NC_003401.1 + 389 0.84 0.060359
Target:  5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3'
miRNA:   3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5'
13095 3' -58.4 NC_003401.1 + 694 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133529 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133489 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133449 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133409 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 133369 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 654 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 774 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 734 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5'
13095 3' -58.4 NC_003401.1 + 814 1.06 0.001673
Target:  5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.