miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13097 3' -61.9 NC_003401.1 + 935 1.11 0.000611
Target:  5'- cGGACGCCCUCGCACGCAGCUGGCCGGc -3'
miRNA:   3'- -CCUGCGGGAGCGUGCGUCGACCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 133650 1.11 0.000611
Target:  5'- cGGACGCCCUCGCACGCAGCUGGCCGGc -3'
miRNA:   3'- -CCUGCGGGAGCGUGCGUCGACCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 83169 0.75 0.192207
Target:  5'- aGGgGCaUCUUGCACGCGGCUGGCaGGg -3'
miRNA:   3'- cCUgCG-GGAGCGUGCGUCGACCGgCC- -5'
13097 3' -61.9 NC_003401.1 + 11199 0.72 0.305362
Target:  5'- aGAuCGCUCUgGCGCGuCAGggGGCCGGu -3'
miRNA:   3'- cCU-GCGGGAgCGUGC-GUCgaCCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132535 0.72 0.312187
Target:  5'- ---gGCCCg-GCGCGCGGCgcggggcGGCCGGg -3'
miRNA:   3'- ccugCGGGagCGUGCGUCGa------CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 46167 0.72 0.333352
Target:  5'- uGACGCUauCUgGUACGCGGCgGuGCCGGu -3'
miRNA:   3'- cCUGCGG--GAgCGUGCGUCGaC-CGGCC- -5'
13097 3' -61.9 NC_003401.1 + 27744 0.71 0.370918
Target:  5'- uGGAUGCCCU-GCGCGCu-CUGGUaCGGc -3'
miRNA:   3'- -CCUGCGGGAgCGUGCGucGACCG-GCC- -5'
13097 3' -61.9 NC_003401.1 + 100822 0.7 0.419663
Target:  5'- uGGugGUUCUCgGCACGCGuGCgaGGuuGGa -3'
miRNA:   3'- -CCugCGGGAG-CGUGCGU-CGa-CCggCC- -5'
13097 3' -61.9 NC_003401.1 + 14225 0.69 0.435889
Target:  5'- cGGACGCCCggGgGCGCuagagggugucggGGaCcGGCCGGg -3'
miRNA:   3'- -CCUGCGGGagCgUGCG-------------UC-GaCCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132659 0.69 0.454237
Target:  5'- gGGGCGCgg-CGC-CGCcgGGCUcGGCCGGa -3'
miRNA:   3'- -CCUGCGggaGCGuGCG--UCGA-CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 121931 0.69 0.481153
Target:  5'- gGGGCGCgggUGCG-GCGGCUGGCgCGGc -3'
miRNA:   3'- -CCUGCGggaGCGUgCGUCGACCG-GCC- -5'
13097 3' -61.9 NC_003401.1 + 132376 0.69 0.481153
Target:  5'- cGGcCGCCC-CGCGcCGCGcGCcgGGCCGc -3'
miRNA:   3'- -CCuGCGGGaGCGU-GCGU-CGa-CCGGCc -5'
13097 3' -61.9 NC_003401.1 + 42355 0.68 0.50882
Target:  5'- gGGACGUuaaacgcgaCCg-GCACGC-GCUGGgCCGGc -3'
miRNA:   3'- -CCUGCG---------GGagCGUGCGuCGACC-GGCC- -5'
13097 3' -61.9 NC_003401.1 + 132219 0.68 0.50882
Target:  5'- aGGCGCCCggccggCGC-CGCcGCcgGGCCGcGg -3'
miRNA:   3'- cCUGCGGGa-----GCGuGCGuCGa-CCGGC-C- -5'
13097 3' -61.9 NC_003401.1 + 120706 0.68 0.527633
Target:  5'- -aGCGCCaCUgGuucUugGCAGCcGGCCGGu -3'
miRNA:   3'- ccUGCGG-GAgC---GugCGUCGaCCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 5848 0.68 0.537136
Target:  5'- -uACGCCUUaaCGuCACGUGGCgugcgauugUGGCCGGg -3'
miRNA:   3'- ccUGCGGGA--GC-GUGCGUCG---------ACCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 108870 0.68 0.546698
Target:  5'- cGGGC-CCUUCGgACGCGGgacuuCUGGCCu- -3'
miRNA:   3'- -CCUGcGGGAGCgUGCGUC-----GACCGGcc -5'
13097 3' -61.9 NC_003401.1 + 92347 0.68 0.546698
Target:  5'- uGGACGaacccaaccuaCCCUCGUuccACGacaGGCUagagcaGGCCGGg -3'
miRNA:   3'- -CCUGC-----------GGGAGCG---UGCg--UCGA------CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 126057 0.67 0.556314
Target:  5'- uGGCGCaCCUCGUcgACGU-GCUggGGCUGGa -3'
miRNA:   3'- cCUGCG-GGAGCG--UGCGuCGA--CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 40343 0.67 0.564041
Target:  5'- aGGACuCCCUCGCcaaaacaccgauCGCGGC-GGCUGu -3'
miRNA:   3'- -CCUGcGGGAGCGu-----------GCGUCGaCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.