miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13098 5' -47.3 NC_003401.1 + 243 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 263 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 283 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 303 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 323 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 343 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 363 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 383 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 6491 1.09 0.015954
Target:  5'- aACACCGGCCUGAAUAAACUUGCAUUGu -3'
miRNA:   3'- -UGUGGCCGGACUUAUUUGAACGUAAC- -5'
13098 5' -47.3 NC_003401.1 + 8763 0.67 0.997982
Target:  5'- aGCACCGGCgUGAGgcag--UGCAg-- -3'
miRNA:   3'- -UGUGGCCGgACUUauuugaACGUaac -5'
13098 5' -47.3 NC_003401.1 + 12054 0.69 0.99115
Target:  5'- gGCACCGGUC-GGAUGAccuCUUGC-UUGc -3'
miRNA:   3'- -UGUGGCCGGaCUUAUUu--GAACGuAAC- -5'
13098 5' -47.3 NC_003401.1 + 15833 0.67 0.998332
Target:  5'- cGCGCCuGGCCUGAAUcuuGGCcaGC-UUGg -3'
miRNA:   3'- -UGUGG-CCGGACUUAu--UUGaaCGuAAC- -5'
13098 5' -47.3 NC_003401.1 + 16756 0.69 0.993408
Target:  5'- gGCAUCGcuCCUGGAcAAACUUGCAg-- -3'
miRNA:   3'- -UGUGGCc-GGACUUaUUUGAACGUaac -5'
13098 5' -47.3 NC_003401.1 + 32830 0.67 0.998332
Target:  5'- -aACCGGCCUGggUAcaucAACcUUaGCAUc- -3'
miRNA:   3'- ugUGGCCGGACuuAU----UUG-AA-CGUAac -5'
13098 5' -47.3 NC_003401.1 + 42098 0.66 0.999412
Target:  5'- aACACgggaGGCCUGggUAacaAACggGCAggUGa -3'
miRNA:   3'- -UGUGg---CCGGACuuAU---UUGaaCGUa-AC- -5'
13098 5' -47.3 NC_003401.1 + 52532 0.66 0.999532
Target:  5'- -aGCCGGCgUGAGUuuuuuuACgagUGCAUUu -3'
miRNA:   3'- ugUGGCCGgACUUAuu----UGa--ACGUAAc -5'
13098 5' -47.3 NC_003401.1 + 73273 0.69 0.98967
Target:  5'- aACGCCGGCUUGAaaAUGAcagggucaauuguGCUcGCGUUa -3'
miRNA:   3'- -UGUGGCCGGACU--UAUU-------------UGAaCGUAAc -5'
13098 5' -47.3 NC_003401.1 + 91388 0.66 0.999532
Target:  5'- cUACCGGCCUGGcucucgcggcagGUGGAUguaccgUGCAc-- -3'
miRNA:   3'- uGUGGCCGGACU------------UAUUUGa-----ACGUaac -5'
13098 5' -47.3 NC_003401.1 + 121748 0.7 0.986666
Target:  5'- aACACCGGCCaGAcccgcuuGGCgacgGCGUUGg -3'
miRNA:   3'- -UGUGGCCGGaCUuau----UUGaa--CGUAAC- -5'
13098 5' -47.3 NC_003401.1 + 128061 0.66 0.999267
Target:  5'- uGCACCuGUCUGAAUGGcGCUgUGCAg-- -3'
miRNA:   3'- -UGUGGcCGGACUUAUU-UGA-ACGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.