Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13098 | 5' | -47.3 | NC_003401.1 | + | 15833 | 0.67 | 0.998332 |
Target: 5'- cGCGCCuGGCCUGAAUcuuGGCcaGC-UUGg -3' miRNA: 3'- -UGUGG-CCGGACUUAu--UUGaaCGuAAC- -5' |
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13098 | 5' | -47.3 | NC_003401.1 | + | 8763 | 0.67 | 0.997982 |
Target: 5'- aGCACCGGCgUGAGgcag--UGCAg-- -3' miRNA: 3'- -UGUGGCCGgACUUauuugaACGUaac -5' |
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13098 | 5' | -47.3 | NC_003401.1 | + | 16756 | 0.69 | 0.993408 |
Target: 5'- gGCAUCGcuCCUGGAcAAACUUGCAg-- -3' miRNA: 3'- -UGUGGCc-GGACUUaUUUGAACGUaac -5' |
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13098 | 5' | -47.3 | NC_003401.1 | + | 12054 | 0.69 | 0.99115 |
Target: 5'- gGCACCGGUC-GGAUGAccuCUUGC-UUGc -3' miRNA: 3'- -UGUGGCCGGaCUUAUUu--GAACGuAAC- -5' |
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13098 | 5' | -47.3 | NC_003401.1 | + | 73273 | 0.69 | 0.98967 |
Target: 5'- aACGCCGGCUUGAaaAUGAcagggucaauuguGCUcGCGUUa -3' miRNA: 3'- -UGUGGCCGGACU--UAUU-------------UGAaCGUAAc -5' |
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13098 | 5' | -47.3 | NC_003401.1 | + | 121748 | 0.7 | 0.986666 |
Target: 5'- aACACCGGCCaGAcccgcuuGGCgacgGCGUUGg -3' miRNA: 3'- -UGUGGCCGGaCUuau----UUGaa--CGUAAC- -5' |
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13098 | 5' | -47.3 | NC_003401.1 | + | 6491 | 1.09 | 0.015954 |
Target: 5'- aACACCGGCCUGAAUAAACUUGCAUUGu -3' miRNA: 3'- -UGUGGCCGGACUUAUUUGAACGUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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