miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13099 3' -56.6 NC_003401.1 + 27282 0.66 0.86334
Target:  5'- aGCGAauacUGAGGCaucGCCGCaacgcGAGGAGAc- -3'
miRNA:   3'- -CGCU----GCUUCG---CGGCGga---CUCCUCUuu -5'
13099 3' -56.6 NC_003401.1 + 72525 0.66 0.85558
Target:  5'- cGCgGACGggGCGCUcag-GAGGAGGc- -3'
miRNA:   3'- -CG-CUGCuuCGCGGcggaCUCCUCUuu -5'
13099 3' -56.6 NC_003401.1 + 93045 0.66 0.847612
Target:  5'- uGCGACGGAGgGggauUCGUCUcGGGAGAu- -3'
miRNA:   3'- -CGCUGCUUCgC----GGCGGAcUCCUCUuu -5'
13099 3' -56.6 NC_003401.1 + 64544 0.67 0.813815
Target:  5'- -aGACGGauGGCG-CGCCUuGAGGAcGAGAu -3'
miRNA:   3'- cgCUGCU--UCGCgGCGGA-CUCCU-CUUU- -5'
13099 3' -56.6 NC_003401.1 + 125815 0.68 0.732765
Target:  5'- uCGACGucGCgGCCGUCUccaccgacgaccuuaGAGGAGGGAa -3'
miRNA:   3'- cGCUGCuuCG-CGGCGGA---------------CUCCUCUUU- -5'
13099 3' -56.6 NC_003401.1 + 16667 0.68 0.714764
Target:  5'- uGCGGCGcggcuguugugcAAGCgGCCGCCgcacgcgguauacGAGGAGggGc -3'
miRNA:   3'- -CGCUGC------------UUCG-CGGCGGa------------CUCCUCuuU- -5'
13099 3' -56.6 NC_003401.1 + 63682 0.69 0.698565
Target:  5'- aGCGGCGGuguucGUGCCGCCUGcaaGAGGc- -3'
miRNA:   3'- -CGCUGCUu----CGCGGCGGACuc-CUCUuu -5'
13099 3' -56.6 NC_003401.1 + 132481 0.69 0.688365
Target:  5'- cGgGGCGGAGgGCCgggaGCCgGGGGAGGc- -3'
miRNA:   3'- -CgCUGCUUCgCGG----CGGaCUCCUCUuu -5'
13099 3' -56.6 NC_003401.1 + 132643 0.69 0.667829
Target:  5'- -gGugGucuccGCGCCGCCggGAGGGGGGc -3'
miRNA:   3'- cgCugCuu---CGCGGCGGa-CUCCUCUUu -5'
13099 3' -56.6 NC_003401.1 + 82306 0.7 0.636824
Target:  5'- uUGugGAAGCGCCGCUccguccGGAGAu- -3'
miRNA:   3'- cGCugCUUCGCGGCGGacu---CCUCUuu -5'
13099 3' -56.6 NC_003401.1 + 23519 0.71 0.544437
Target:  5'- gGUGACGc-GCGCCGCa-GAGGAGGc- -3'
miRNA:   3'- -CGCUGCuuCGCGGCGgaCUCCUCUuu -5'
13099 3' -56.6 NC_003401.1 + 14921 0.74 0.420337
Target:  5'- cGCGACGAGGCgGUCGC-UGAGGGucGAGAg -3'
miRNA:   3'- -CGCUGCUUCG-CGGCGgACUCCU--CUUU- -5'
13099 3' -56.6 NC_003401.1 + 100939 0.75 0.369081
Target:  5'- cCGACGAAGCGUCGUCUGAcGAcGAAGg -3'
miRNA:   3'- cGCUGCUUCGCGGCGGACUcCU-CUUU- -5'
13099 3' -56.6 NC_003401.1 + 11035 1.08 0.00219
Target:  5'- cGCGACGAAGCGCCGCCUGAGGAGAAAa -3'
miRNA:   3'- -CGCUGCUUCGCGGCGGACUCCUCUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.