miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
131 5' -58.9 AC_000006.1 + 23160 0.66 0.377273
Target:  5'- -aCGCGGGuugggcuCGCaggUGCCGUUGgGCuGGCg -3'
miRNA:   3'- uaGUGCCCu------GCG---AUGGCGACgCG-UCG- -5'
131 5' -58.9 AC_000006.1 + 8313 0.66 0.359598
Target:  5'- uGUCGCGGacGCGCUcCCgGCgGCaGCGGCg -3'
miRNA:   3'- -UAGUGCCc-UGCGAuGG-CGaCG-CGUCG- -5'
131 5' -58.9 AC_000006.1 + 15603 0.67 0.334187
Target:  5'- cGUCACGGGcguGCGCgUGCCcgUGCGCAc- -3'
miRNA:   3'- -UAGUGCCC---UGCG-AUGGcgACGCGUcg -5'
131 5' -58.9 AC_000006.1 + 23315 0.67 0.334187
Target:  5'- cUCGguCGGGACGaga-CGC-GCGCGGCg -3'
miRNA:   3'- uAGU--GCCCUGCgaugGCGaCGCGUCG- -5'
131 5' -58.9 AC_000006.1 + 9285 0.67 0.334187
Target:  5'- --aAUGGGGCGgguccCCGUUGgGCAGCg -3'
miRNA:   3'- uagUGCCCUGCgau--GGCGACgCGUCG- -5'
131 5' -58.9 AC_000006.1 + 8271 0.67 0.334187
Target:  5'- -gCGCGGGGCcacgACCGUgccGCGguGCg -3'
miRNA:   3'- uaGUGCCCUGcga-UGGCGa--CGCguCG- -5'
131 5' -58.9 AC_000006.1 + 8392 0.69 0.245901
Target:  5'- -cCGCGGGGCcggaaccgccGCUGCCGCcgggaGCGCGuccGCg -3'
miRNA:   3'- uaGUGCCCUG----------CGAUGGCGa----CGCGU---CG- -5'
131 5' -58.9 AC_000006.1 + 16889 0.69 0.23949
Target:  5'- gAUCcCGGGcauaGCUuCCGUUGCGCuGCa -3'
miRNA:   3'- -UAGuGCCCug--CGAuGGCGACGCGuCG- -5'
131 5' -58.9 AC_000006.1 + 13088 0.69 0.227087
Target:  5'- cUCGCGGGcguGCGC-ACCGCcuccugGCGCuuuuGCa -3'
miRNA:   3'- uAGUGCCC---UGCGaUGGCGa-----CGCGu---CG- -5'
131 5' -58.9 AC_000006.1 + 12101 0.69 0.221092
Target:  5'- gGUgACGGacguGCGCgaaGCCGUgGCGCAGCg -3'
miRNA:   3'- -UAgUGCCc---UGCGa--UGGCGaCGCGUCG- -5'
131 5' -58.9 AC_000006.1 + 10104 0.71 0.182815
Target:  5'- cUCGC-GGACGCgguuCCagauGUUGCGCAGCg -3'
miRNA:   3'- uAGUGcCCUGCGau--GG----CGACGCGUCG- -5'
131 5' -58.9 AC_000006.1 + 15409 0.74 0.098151
Target:  5'- -cCAUGGGGCGCcGCCcgagcucuGCUGCGCcGCg -3'
miRNA:   3'- uaGUGCCCUGCGaUGG--------CGACGCGuCG- -5'
131 5' -58.9 AC_000006.1 + 3693 0.75 0.092629
Target:  5'- uGUCAUGGcGGCugcgGCUGCCGCgGCuGCGGCg -3'
miRNA:   3'- -UAGUGCC-CUG----CGAUGGCGaCG-CGUCG- -5'
131 5' -58.9 AC_000006.1 + 14995 0.76 0.071235
Target:  5'- cUCGCuGGAcucCGCggaUACUGCUGCGCAGCg -3'
miRNA:   3'- uAGUGcCCU---GCG---AUGGCGACGCGUCG- -5'
131 5' -58.9 AC_000006.1 + 14913 1.1 0.000178
Target:  5'- gAUCACGGGACGCUACCGCUGCGCAGCa -3'
miRNA:   3'- -UAGUGCCCUGCGAUGGCGACGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.