miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13100 3' -50.8 NC_003401.1 + 119081 0.66 0.986011
Target:  5'- --cGGCACCGGCGUUaaccgGGUGCGu -3'
miRNA:   3'- agaCUGUGGUCGUAGaaca-CUACGCc -5'
13100 3' -50.8 NC_003401.1 + 129390 0.66 0.986011
Target:  5'- uUCgu-CugUAGCGUCUUGUGGaGgGGg -3'
miRNA:   3'- -AGacuGugGUCGUAGAACACUaCgCC- -5'
13100 3' -50.8 NC_003401.1 + 107546 0.67 0.984189
Target:  5'- uUUUGAgACgAGCGUCUUGUGuccagaguaguUGCGu -3'
miRNA:   3'- -AGACUgUGgUCGUAGAACACu----------ACGCc -5'
13100 3' -50.8 NC_003401.1 + 8888 0.67 0.982192
Target:  5'- gCUGACgcGCCGuCGUCUggacgGUGAggGCGGu -3'
miRNA:   3'- aGACUG--UGGUcGUAGAa----CACUa-CGCC- -5'
13100 3' -50.8 NC_003401.1 + 127631 0.67 0.981982
Target:  5'- aUCUcGuaaGCCAGCGacaacguUUggGUGAUGCGGg -3'
miRNA:   3'- -AGA-Cug-UGGUCGU-------AGaaCACUACGCC- -5'
13100 3' -50.8 NC_003401.1 + 63959 0.69 0.946325
Target:  5'- -gUGGCGCgGGCGcgCUcgGUGGUGUGGu -3'
miRNA:   3'- agACUGUGgUCGUa-GAa-CACUACGCC- -5'
13100 3' -50.8 NC_003401.1 + 82911 0.7 0.914246
Target:  5'- gUUGGCGCCGGUGUUcgGUacacuGGUGCGGu -3'
miRNA:   3'- aGACUGUGGUCGUAGaaCA-----CUACGCC- -5'
13100 3' -50.8 NC_003401.1 + 87986 0.7 0.907988
Target:  5'- aUUUGGCACgAGUGUCU-GUGGcgggcgUGCGGg -3'
miRNA:   3'- -AGACUGUGgUCGUAGAaCACU------ACGCC- -5'
13100 3' -50.8 NC_003401.1 + 43318 0.73 0.823133
Target:  5'- gCUGGuCGCCGGCGUUcccGUGAgGCGGg -3'
miRNA:   3'- aGACU-GUGGUCGUAGaa-CACUaCGCC- -5'
13100 3' -50.8 NC_003401.1 + 46423 0.8 0.436384
Target:  5'- gUCcGGCACCGGCAUCggugcgGUGAUuGCGGu -3'
miRNA:   3'- -AGaCUGUGGUCGUAGaa----CACUA-CGCC- -5'
13100 3' -50.8 NC_003401.1 + 11284 1.12 0.004841
Target:  5'- cUCUGACACCAGCAUCUUGUGAUGCGGa -3'
miRNA:   3'- -AGACUGUGGUCGUAGAACACUACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.