miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13100 5' -58.8 NC_003401.1 + 11249 1.1 0.001217
Target:  5'- cGGCCGCCUCGAAACACUGGGCCAGCGc -3'
miRNA:   3'- -CCGGCGGAGCUUUGUGACCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132398 0.76 0.244863
Target:  5'- gGGCCGCUuUCGGuuCGCgGGGCCGGgGg -3'
miRNA:   3'- -CCGGCGG-AGCUuuGUGaCCCGGUCgC- -5'
13100 5' -58.8 NC_003401.1 + 45049 0.75 0.295251
Target:  5'- aGGCCGCCUUu-AACA--GGGCCAGCc -3'
miRNA:   3'- -CCGGCGGAGcuUUGUgaCCCGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 28665 0.73 0.377129
Target:  5'- cGGCC-CCUCuuGAGACACUGauGGCCAagGCGa -3'
miRNA:   3'- -CCGGcGGAG--CUUUGUGAC--CCGGU--CGC- -5'
13100 5' -58.8 NC_003401.1 + 43154 0.72 0.436637
Target:  5'- cGGcCCGCCUCacgGGAACGCcGGcGaCCAGCGc -3'
miRNA:   3'- -CC-GGCGGAG---CUUUGUGaCC-C-GGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132494 0.71 0.491705
Target:  5'- gGGCCcggGCCggCGggGCGgaGGGCCGGg- -3'
miRNA:   3'- -CCGG---CGGa-GCuuUGUgaCCCGGUCgc -5'
13100 5' -58.8 NC_003401.1 + 127538 0.71 0.491705
Target:  5'- aGGCCGCCccgCGAGAC-CaGGGCUcccaGGUGg -3'
miRNA:   3'- -CCGGCGGa--GCUUUGuGaCCCGG----UCGC- -5'
13100 5' -58.8 NC_003401.1 + 69737 0.7 0.510771
Target:  5'- cGGCCGCCaugCGGGACuCUGGaguGUUGGCGa -3'
miRNA:   3'- -CCGGCGGa--GCUUUGuGACC---CGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 14236 0.7 0.510771
Target:  5'- cGCCuGCCUCcGAACGCcagGGGCaGGCGg -3'
miRNA:   3'- cCGG-CGGAGcUUUGUGa--CCCGgUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132668 0.69 0.569617
Target:  5'- gGGCCgggGCC-CGggGCGCcucggcgGGGCcCGGCGc -3'
miRNA:   3'- -CCGG---CGGaGCuuUGUGa------CCCG-GUCGC- -5'
13100 5' -58.8 NC_003401.1 + 118374 0.69 0.579609
Target:  5'- cGGCUcgGCCUgCGGcGACGCUGacGCCGGCGg -3'
miRNA:   3'- -CCGG--CGGA-GCU-UUGUGACc-CGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132650 0.69 0.590641
Target:  5'- cGCCGCCgggcucggccggacCGggGCGCUcccgggagucggccGGGCCcGGCGg -3'
miRNA:   3'- cCGGCGGa-------------GCuuUGUGA--------------CCCGG-UCGC- -5'
13100 5' -58.8 NC_003401.1 + 87969 0.69 0.609777
Target:  5'- -aCCGCaCUC-AGAUAUUGGGCgAGCGa -3'
miRNA:   3'- ccGGCG-GAGcUUUGUGACCCGgUCGC- -5'
13100 5' -58.8 NC_003401.1 + 52507 0.69 0.619875
Target:  5'- cGGCCGCUgCGuuAAGCAUuuUGGcaGCCGGCGu -3'
miRNA:   3'- -CCGGCGGaGC--UUUGUG--ACC--CGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 21460 0.69 0.619875
Target:  5'- gGGaCCGCCgCGAgGGCGaucugGGGCCGGUGu -3'
miRNA:   3'- -CC-GGCGGaGCU-UUGUga---CCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 20594 0.68 0.640091
Target:  5'- cGGCCGCCaacccccAACGCgGGGCC-GCGc -3'
miRNA:   3'- -CCGGCGGagcu---UUGUGaCCCGGuCGC- -5'
13100 5' -58.8 NC_003401.1 + 105478 0.68 0.650194
Target:  5'- gGGCCGUUUUu-GAC-CUGGGCCucuAGCGu -3'
miRNA:   3'- -CCGGCGGAGcuUUGuGACCCGG---UCGC- -5'
13100 5' -58.8 NC_003401.1 + 117621 0.68 0.67035
Target:  5'- uGGCCGCCgCGGguuaguuugauuGACgGCUuGGCCGGCc -3'
miRNA:   3'- -CCGGCGGaGCU------------UUG-UGAcCCGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 71668 0.68 0.680386
Target:  5'- aGCCGCCUgGGAcaGCACcgaGGGCCGa-- -3'
miRNA:   3'- cCGGCGGAgCUU--UGUGa--CCCGGUcgc -5'
13100 5' -58.8 NC_003401.1 + 132206 0.68 0.680386
Target:  5'- cGGCCggGCC-CgGAGGCGCccGGCCGGCGc -3'
miRNA:   3'- -CCGG--CGGaG-CUUUGUGacCCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.