miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13100 5' -58.8 NC_003401.1 + 118012 0.67 0.739488
Target:  5'- cGGCCGCuCUUu-GGCGCcgGGGucguCCGGCGg -3'
miRNA:   3'- -CCGGCG-GAGcuUUGUGa-CCC----GGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 118374 0.69 0.579609
Target:  5'- cGGCUcgGCCUgCGGcGACGCUGacGCCGGCGg -3'
miRNA:   3'- -CCGG--CGGA-GCU-UUGUGACc-CGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 119247 0.67 0.690384
Target:  5'- uGGCCGCCaacgcaccCGGuuAACGCcGGuGCCGGCc -3'
miRNA:   3'- -CCGGCGGa-------GCU--UUGUGaCC-CGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 124253 0.67 0.690384
Target:  5'- cGCCGCC-CGugggucAAGCACgGGGCCuccGGCu -3'
miRNA:   3'- cCGGCGGaGC------UUUGUGaCCCGG---UCGc -5'
13100 5' -58.8 NC_003401.1 + 127538 0.71 0.491705
Target:  5'- aGGCCGCCccgCGAGAC-CaGGGCUcccaGGUGg -3'
miRNA:   3'- -CCGGCGGa--GCUUUGuGaCCCGG----UCGC- -5'
13100 5' -58.8 NC_003401.1 + 128198 0.66 0.767926
Target:  5'- uGCCGUUg-GAGGC-CUGcacGGCCAGCGg -3'
miRNA:   3'- cCGGCGGagCUUUGuGAC---CCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132206 0.68 0.680386
Target:  5'- cGGCCggGCC-CgGAGGCGCccGGCCGGCGc -3'
miRNA:   3'- -CCGG--CGGaG-CUUUGUGacCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132249 0.66 0.777181
Target:  5'- cGGCCGCCaUCuu-GCGCccgGGGCgAGgGu -3'
miRNA:   3'- -CCGGCGG-AGcuuUGUGa--CCCGgUCgC- -5'
13100 5' -58.8 NC_003401.1 + 132398 0.76 0.244863
Target:  5'- gGGCCGCUuUCGGuuCGCgGGGCCGGgGg -3'
miRNA:   3'- -CCGGCGG-AGCUuuGUGaCCCGGUCgC- -5'
13100 5' -58.8 NC_003401.1 + 132442 0.66 0.777181
Target:  5'- gGGCCGCCccCGGGugcCGCUccgccGGGcCCGGCc -3'
miRNA:   3'- -CCGGCGGa-GCUUu--GUGA-----CCC-GGUCGc -5'
13100 5' -58.8 NC_003401.1 + 132494 0.71 0.491705
Target:  5'- gGGCCcggGCCggCGggGCGgaGGGCCGGg- -3'
miRNA:   3'- -CCGG---CGGa-GCuuUGUgaCCCGGUCgc -5'
13100 5' -58.8 NC_003401.1 + 132650 0.69 0.590641
Target:  5'- cGCCGCCgggcucggccggacCGggGCGCUcccgggagucggccGGGCCcGGCGg -3'
miRNA:   3'- cCGGCGGa-------------GCuuUGUGA--------------CCCGG-UCGC- -5'
13100 5' -58.8 NC_003401.1 + 132668 0.69 0.569617
Target:  5'- gGGCCgggGCC-CGggGCGCcucggcgGGGCcCGGCGc -3'
miRNA:   3'- -CCGG---CGGaGCuuUGUGa------CCCG-GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.