miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13101 5' -56.5 NC_003401.1 + 20716 0.66 0.88876
Target:  5'- -aAUGGAccUGGCGUugaccggccgcCGCCCGCGAu- -3'
miRNA:   3'- agUGCCUcuACCGCA-----------GCGGGUGCUug -5'
13101 5' -56.5 NC_003401.1 + 72512 0.66 0.88876
Target:  5'- cUCA-GGAGGaGGCG-CGCCCAguccaGGACc -3'
miRNA:   3'- -AGUgCCUCUaCCGCaGCGGGUg----CUUG- -5'
13101 5' -56.5 NC_003401.1 + 64529 0.66 0.886709
Target:  5'- -gGCGGuagccaggggagacGGAUGGCG-CGCCUugaGGACg -3'
miRNA:   3'- agUGCC--------------UCUACCGCaGCGGGug-CUUG- -5'
13101 5' -56.5 NC_003401.1 + 19785 0.66 0.867352
Target:  5'- uUCuCGGGGuc-GCG-CGCCuCGCGAACa -3'
miRNA:   3'- -AGuGCCUCuacCGCaGCGG-GUGCUUG- -5'
13101 5' -56.5 NC_003401.1 + 68706 0.66 0.859785
Target:  5'- gUUugGGGGcGUGGCGUCGUCUcauauguugcagGCGGc- -3'
miRNA:   3'- -AGugCCUC-UACCGCAGCGGG------------UGCUug -5'
13101 5' -56.5 NC_003401.1 + 20610 0.67 0.827523
Target:  5'- aCGCGGGGc---CG-CGCCCugGAACg -3'
miRNA:   3'- aGUGCCUCuaccGCaGCGGGugCUUG- -5'
13101 5' -56.5 NC_003401.1 + 132437 0.67 0.818993
Target:  5'- gCGCGGgcccGGggGGCGcgcgggggacccUCGCCC-CGGGCg -3'
miRNA:   3'- aGUGCC----UCuaCCGC------------AGCGGGuGCUUG- -5'
13101 5' -56.5 NC_003401.1 + 54127 0.67 0.801433
Target:  5'- -aACGGGGuuuuUGGCGUCuCCUugGAu- -3'
miRNA:   3'- agUGCCUCu---ACCGCAGcGGGugCUug -5'
13101 5' -56.5 NC_003401.1 + 68684 0.67 0.801433
Target:  5'- gCACGGgacguuacAGGUGGCGgC-CCCGCGggUu -3'
miRNA:   3'- aGUGCC--------UCUACCGCaGcGGGUGCuuG- -5'
13101 5' -56.5 NC_003401.1 + 132429 0.68 0.783258
Target:  5'- cCGCGGGGGgccGGgGcCGCCCcCGggUg -3'
miRNA:   3'- aGUGCCUCUa--CCgCaGCGGGuGCuuG- -5'
13101 5' -56.5 NC_003401.1 + 12268 0.68 0.773963
Target:  5'- gUCGCGGAGAaaaccgaaaacGGCcucggCGCCCGCGuGCu -3'
miRNA:   3'- -AGUGCCUCUa----------CCGca---GCGGGUGCuUG- -5'
13101 5' -56.5 NC_003401.1 + 132522 0.69 0.745351
Target:  5'- gCGCGGGGcggccgggGGCGgCGgCCGCGGGCc -3'
miRNA:   3'- aGUGCCUCua------CCGCaGCgGGUGCUUG- -5'
13101 5' -56.5 NC_003401.1 + 11752 0.69 0.725764
Target:  5'- uUCGCGGuGGUGGuCG-CGCCCuuGGGg -3'
miRNA:   3'- -AGUGCCuCUACC-GCaGCGGGugCUUg -5'
13101 5' -56.5 NC_003401.1 + 89690 0.69 0.715845
Target:  5'- ---aGGAGGcaggGGCGUCccuggcucaaGCCCAUGGACg -3'
miRNA:   3'- agugCCUCUa---CCGCAG----------CGGGUGCUUG- -5'
13101 5' -56.5 NC_003401.1 + 118346 0.7 0.655143
Target:  5'- cCGCGGugccgccGccGGgGUCGCCCGCGggUc -3'
miRNA:   3'- aGUGCCu------CuaCCgCAGCGGGUGCuuG- -5'
13101 5' -56.5 NC_003401.1 + 14316 0.7 0.644911
Target:  5'- cUCGCGGAGAcGuGCugcUCGCCaACGAACg -3'
miRNA:   3'- -AGUGCCUCUaC-CGc--AGCGGgUGCUUG- -5'
13101 5' -56.5 NC_003401.1 + 15029 0.71 0.614187
Target:  5'- -gGCGGGGcGUGGCGcgCGCgCACGAGu -3'
miRNA:   3'- agUGCCUC-UACCGCa-GCGgGUGCUUg -5'
13101 5' -56.5 NC_003401.1 + 88438 0.71 0.603962
Target:  5'- aCAUGGAGGUcGG-GUCGCCCaACGGc- -3'
miRNA:   3'- aGUGCCUCUA-CCgCAGCGGG-UGCUug -5'
13101 5' -56.5 NC_003401.1 + 10829 0.78 0.274921
Target:  5'- gUAUGGGGG-GGCGUCGCCUACGGc- -3'
miRNA:   3'- aGUGCCUCUaCCGCAGCGGGUGCUug -5'
13101 5' -56.5 NC_003401.1 + 13166 1.1 0.002137
Target:  5'- gUCACGGAGAUGGCGUCGCCCACGAACu -3'
miRNA:   3'- -AGUGCCUCUACCGCAGCGGGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.