miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13102 5' -57.7 NC_003401.1 + 132676 0.66 0.788291
Target:  5'- cGGGCCcgGgGGGCGUCgGG-GcGCGGCg -3'
miRNA:   3'- -CUCGGa-CgUUUGCAGaCCaC-CGCCGa -5'
13102 5' -57.7 NC_003401.1 + 12511 0.66 0.778976
Target:  5'- cGAGUCgGCGAagacccGCGUUUcGGUGGUgGGCUg -3'
miRNA:   3'- -CUCGGaCGUU------UGCAGA-CCACCG-CCGA- -5'
13102 5' -57.7 NC_003401.1 + 68698 0.67 0.740467
Target:  5'- uGGGCgcauuCUGCGcacggGACGUUacaGGUGGCGGCc -3'
miRNA:   3'- -CUCG-----GACGU-----UUGCAGa--CCACCGCCGa -5'
13102 5' -57.7 NC_003401.1 + 90574 0.67 0.740467
Target:  5'- -uGCCUGCGGAaaccuUCUGaUGGCGGUg -3'
miRNA:   3'- cuCGGACGUUUgc---AGACcACCGCCGa -5'
13102 5' -57.7 NC_003401.1 + 69438 0.68 0.669721
Target:  5'- gGGGCC-GCAGAUGUCgaaccGGUuagugcGGCGGCc -3'
miRNA:   3'- -CUCGGaCGUUUGCAGa----CCA------CCGCCGa -5'
13102 5' -57.7 NC_003401.1 + 22773 0.69 0.618059
Target:  5'- cGAGCacgGCGAGCGUggcgCUGGUGGCaacGCa -3'
miRNA:   3'- -CUCGga-CGUUUGCA----GACCACCGc--CGa -5'
13102 5' -57.7 NC_003401.1 + 35218 0.69 0.597413
Target:  5'- cGGCUcggaacugGCAcaaggAGCGUCUGGUuuuuGGCGGCUg -3'
miRNA:   3'- cUCGGa-------CGU-----UUGCAGACCA----CCGCCGA- -5'
13102 5' -57.7 NC_003401.1 + 98995 0.7 0.546376
Target:  5'- aGGGCCaGCGAGCGUCUGauaGG-GGCUa -3'
miRNA:   3'- -CUCGGaCGUUUGCAGACca-CCgCCGA- -5'
13102 5' -57.7 NC_003401.1 + 104101 0.7 0.546376
Target:  5'- -uGCCUGCGAucuCGUCacgGGUGGauuGGCg -3'
miRNA:   3'- cuCGGACGUUu--GCAGa--CCACCg--CCGa -5'
13102 5' -57.7 NC_003401.1 + 17328 0.71 0.516414
Target:  5'- -cGCCUGCAAACGUUcaagGGccacGGgGGCUa -3'
miRNA:   3'- cuCGGACGUUUGCAGa---CCa---CCgCCGA- -5'
13102 5' -57.7 NC_003401.1 + 120002 0.74 0.354619
Target:  5'- cGGUCUGCcccCGUCccUGGUGGCGGCc -3'
miRNA:   3'- cUCGGACGuuuGCAG--ACCACCGCCGa -5'
13102 5' -57.7 NC_003401.1 + 84355 0.75 0.309207
Target:  5'- gGGGUCgUGCGGACGcacGGUGGCGGCUg -3'
miRNA:   3'- -CUCGG-ACGUUUGCagaCCACCGCCGA- -5'
13102 5' -57.7 NC_003401.1 + 14364 1.07 0.001816
Target:  5'- uGAGCCUGCAAACGUCUGGUGGCGGCUg -3'
miRNA:   3'- -CUCGGACGUUUGCAGACCACCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.