Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13103 | 5' | -51.1 | NC_003401.1 | + | 128529 | 0.69 | 0.953012 |
Target: 5'- cGGGUACC-CCCGGGCaccuUGGcc-GCCCu -3' miRNA: 3'- -CUCAUGGuGGGCUUGc---ACCauuUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 10824 | 0.69 | 0.939499 |
Target: 5'- cGGuUGCCGCCaCGGugGUGGUccguGGCuCCg -3' miRNA: 3'- cUC-AUGGUGG-GCUugCACCAu---UUG-GG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 44177 | 0.7 | 0.917938 |
Target: 5'- uGGUGCCACCUGA----GGUAcaGGCCCu -3' miRNA: 3'- cUCAUGGUGGGCUugcaCCAU--UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 79899 | 0.71 | 0.90563 |
Target: 5'- aGGUACCGgCgGGACG-GGUAcgaaguAGCCCg -3' miRNA: 3'- cUCAUGGUgGgCUUGCaCCAU------UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 133709 | 0.71 | 0.885297 |
Target: 5'- cGGGUGCCcggcggUCCGGGCGgGGgagAGGCCCg -3' miRNA: 3'- -CUCAUGGu-----GGGCUUGCaCCa--UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 108603 | 0.72 | 0.846705 |
Target: 5'- -cGUGCCAgcUCCGAGgGUGGUGGuguGCCUc -3' miRNA: 3'- cuCAUGGU--GGGCUUgCACCAUU---UGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 56627 | 0.74 | 0.755044 |
Target: 5'- uGAGUGCCAccuCCCGGGCGUucauGGUGccguGGCUCa -3' miRNA: 3'- -CUCAUGGU---GGGCUUGCA----CCAU----UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 64379 | 0.74 | 0.735007 |
Target: 5'- cGGUACCGCCCGggUacGG-AGGCCCc -3' miRNA: 3'- cUCAUGGUGGGCuuGcaCCaUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 1593 | 0.75 | 0.72484 |
Target: 5'- aGGUAUCuCCgGGAUGUGGUGGACaCCa -3' miRNA: 3'- cUCAUGGuGGgCUUGCACCAUUUG-GG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 123225 | 0.76 | 0.6624 |
Target: 5'- -cGUGCCGCCCGAGCuGUGcagcGAACCUg -3' miRNA: 3'- cuCAUGGUGGGCUUG-CACca--UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 15007 | 1.14 | 0.004092 |
Target: 5'- cGAGUACCACCCGAACGUGGUAAACCCg -3' miRNA: 3'- -CUCAUGGUGGGCUUGCACCAUUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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