miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13104 3' -54.5 NC_003401.1 + 66668 0.66 0.945437
Target:  5'- aGCGGG-GAugUCcGGGUggaaaccaGCCGCGUUGCc -3'
miRNA:   3'- -CGUCCuCU--AGaCCUAg-------UGGCGCAGCG- -5'
13104 3' -54.5 NC_003401.1 + 84833 0.66 0.936043
Target:  5'- -gAGGAGcgaaaCUcGGAucauUCACCGUGUCGUu -3'
miRNA:   3'- cgUCCUCua---GA-CCU----AGUGGCGCAGCG- -5'
13104 3' -54.5 NC_003401.1 + 108857 0.66 0.930982
Target:  5'- cGCGGGAcuUCUGGccUCGCUGCGagaacuggCGCc -3'
miRNA:   3'- -CGUCCUcuAGACCu-AGUGGCGCa-------GCG- -5'
13104 3' -54.5 NC_003401.1 + 133691 0.67 0.91434
Target:  5'- gGCGGGGGAgaggCccGGGUC-CCGUGUCc- -3'
miRNA:   3'- -CGUCCUCUa---Ga-CCUAGuGGCGCAGcg -5'
13104 3' -54.5 NC_003401.1 + 121375 0.67 0.91434
Target:  5'- gGUGGGGuGGUCUGuGuggcUCACCGCcuGUUGCg -3'
miRNA:   3'- -CGUCCU-CUAGAC-Cu---AGUGGCG--CAGCG- -5'
13104 3' -54.5 NC_003401.1 + 60984 0.67 0.908308
Target:  5'- uCAGGGGuGUCgUGGAUCACgucaGUCGCc -3'
miRNA:   3'- cGUCCUC-UAG-ACCUAGUGgcg-CAGCG- -5'
13104 3' -54.5 NC_003401.1 + 125395 0.68 0.888781
Target:  5'- uCGGGGGuUUUGGGUCcgGgCGUGUCGUg -3'
miRNA:   3'- cGUCCUCuAGACCUAG--UgGCGCAGCG- -5'
13104 3' -54.5 NC_003401.1 + 100851 0.68 0.888781
Target:  5'- cGguGGGGGUUUGGcgCucgaCGUGUCGg -3'
miRNA:   3'- -CguCCUCUAGACCuaGug--GCGCAGCg -5'
13104 3' -54.5 NC_003401.1 + 121160 0.68 0.881806
Target:  5'- cGCGGGGGGcgCggggGGcgCGCCG-GUUGCu -3'
miRNA:   3'- -CGUCCUCUa-Ga---CCuaGUGGCgCAGCG- -5'
13104 3' -54.5 NC_003401.1 + 27662 0.68 0.8517
Target:  5'- gGCGGcGGGggCUGGAguugCcgGCUGCGUgGCg -3'
miRNA:   3'- -CGUC-CUCuaGACCUa---G--UGGCGCAgCG- -5'
13104 3' -54.5 NC_003401.1 + 88438 0.69 0.818358
Target:  5'- aCAuGGAGGUC-GGGUCGCCcaacgGCGUuCGCc -3'
miRNA:   3'- cGU-CCUCUAGaCCUAGUGG-----CGCA-GCG- -5'
13104 3' -54.5 NC_003401.1 + 28808 0.72 0.68374
Target:  5'- gGCAuGGGGuuuagCUGGAUCuggGCCGC-UCGCg -3'
miRNA:   3'- -CGU-CCUCua---GACCUAG---UGGCGcAGCG- -5'
13104 3' -54.5 NC_003401.1 + 28085 0.73 0.628124
Target:  5'- uCAGGcGGAUCUGaGGgaccuaaaacgaGCCGCGUCGCa -3'
miRNA:   3'- cGUCC-UCUAGAC-CUag----------UGGCGCAGCG- -5'
13104 3' -54.5 NC_003401.1 + 123545 0.73 0.621926
Target:  5'- cCAGGGGAUCcgaaaacacgGGGUCcagggGCCGCGcCGCg -3'
miRNA:   3'- cGUCCUCUAGa---------CCUAG-----UGGCGCaGCG- -5'
13104 3' -54.5 NC_003401.1 + 15212 1.13 0.002014
Target:  5'- cGCAGGAGAUCUGGAUCACCGCGUCGCc -3'
miRNA:   3'- -CGUCCUCUAGACCUAGUGGCGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.