miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13104 5' -58.2 NC_003401.1 + 17848 0.66 0.800281
Target:  5'- cGGCGCACaGGGAcgCgCGgaUCUCCc -3'
miRNA:   3'- aCCGCGUG-CCUUuaGgGCggAGAGGu -5'
13104 5' -58.2 NC_003401.1 + 21501 0.66 0.791279
Target:  5'- -cGCGCACGGG--UCCCgcGCCUUUUUg -3'
miRNA:   3'- acCGCGUGCCUuuAGGG--CGGAGAGGu -5'
13104 5' -58.2 NC_003401.1 + 132415 0.66 0.772855
Target:  5'- cGGgGC-CGGggGUCCCGCggggggCCGg -3'
miRNA:   3'- aCCgCGuGCCuuUAGGGCGgaga--GGU- -5'
13104 5' -58.2 NC_003401.1 + 46486 0.66 0.763452
Target:  5'- gGGCGCGauGAAG--CCGUgUCUCCAc -3'
miRNA:   3'- aCCGCGUgcCUUUagGGCGgAGAGGU- -5'
13104 5' -58.2 NC_003401.1 + 132424 0.66 0.763452
Target:  5'- gGGCGCGCGGggGaccCUCGCC---CCGg -3'
miRNA:   3'- aCCGCGUGCCuuUa--GGGCGGagaGGU- -5'
13104 5' -58.2 NC_003401.1 + 14430 0.66 0.760608
Target:  5'- uUGGCGggaACGGGAucgugaccgggaucAUCCCGCCUgCcCCu -3'
miRNA:   3'- -ACCGCg--UGCCUU--------------UAGGGCGGA-GaGGu -5'
13104 5' -58.2 NC_003401.1 + 111288 0.67 0.744306
Target:  5'- cGGCGUuCGuGGAGUUgaaCGCCUCUuCCAg -3'
miRNA:   3'- aCCGCGuGC-CUUUAGg--GCGGAGA-GGU- -5'
13104 5' -58.2 NC_003401.1 + 109972 0.67 0.704915
Target:  5'- -aGCGUauACGGGAGcCCCGuccugacaCCUCUCCAa -3'
miRNA:   3'- acCGCG--UGCCUUUaGGGC--------GGAGAGGU- -5'
13104 5' -58.2 NC_003401.1 + 98334 0.68 0.688853
Target:  5'- cGGUgucaucaguaucauuGCGCGGAAAUCUucacaCGCCUCUUUg -3'
miRNA:   3'- aCCG---------------CGUGCCUUUAGG-----GCGGAGAGGu -5'
13104 5' -58.2 NC_003401.1 + 73504 0.68 0.67875
Target:  5'- gGGCGCGCGGAuaauuuuuAGUCCCaggggcacgacuagaGgUUCUCCc -3'
miRNA:   3'- aCCGCGUGCCU--------UUAGGG---------------CgGAGAGGu -5'
13104 5' -58.2 NC_003401.1 + 40491 0.7 0.562894
Target:  5'- uUGGCGa--GGGAGUCCUGCCcgUCCGc -3'
miRNA:   3'- -ACCGCgugCCUUUAGGGCGGagAGGU- -5'
13104 5' -58.2 NC_003401.1 + 104808 0.76 0.262694
Target:  5'- cGGCGCACGGAGGagCC-CCUCUgCAc -3'
miRNA:   3'- aCCGCGUGCCUUUagGGcGGAGAgGU- -5'
13104 5' -58.2 NC_003401.1 + 15177 1.08 0.001606
Target:  5'- gUGGCGCACGGAAAUCCCGCCUCUCCAg -3'
miRNA:   3'- -ACCGCGUGCCUUUAGGGCGGAGAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.