Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13104 | 5' | -58.2 | NC_003401.1 | + | 17848 | 0.66 | 0.800281 |
Target: 5'- cGGCGCACaGGGAcgCgCGgaUCUCCc -3' miRNA: 3'- aCCGCGUG-CCUUuaGgGCggAGAGGu -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 21501 | 0.66 | 0.791279 |
Target: 5'- -cGCGCACGGG--UCCCgcGCCUUUUUg -3' miRNA: 3'- acCGCGUGCCUuuAGGG--CGGAGAGGu -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 132415 | 0.66 | 0.772855 |
Target: 5'- cGGgGC-CGGggGUCCCGCggggggCCGg -3' miRNA: 3'- aCCgCGuGCCuuUAGGGCGgaga--GGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 132424 | 0.66 | 0.763452 |
Target: 5'- gGGCGCGCGGggGaccCUCGCC---CCGg -3' miRNA: 3'- aCCGCGUGCCuuUa--GGGCGGagaGGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 46486 | 0.66 | 0.763452 |
Target: 5'- gGGCGCGauGAAG--CCGUgUCUCCAc -3' miRNA: 3'- aCCGCGUgcCUUUagGGCGgAGAGGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 14430 | 0.66 | 0.760608 |
Target: 5'- uUGGCGggaACGGGAucgugaccgggaucAUCCCGCCUgCcCCu -3' miRNA: 3'- -ACCGCg--UGCCUU--------------UAGGGCGGA-GaGGu -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 111288 | 0.67 | 0.744306 |
Target: 5'- cGGCGUuCGuGGAGUUgaaCGCCUCUuCCAg -3' miRNA: 3'- aCCGCGuGC-CUUUAGg--GCGGAGA-GGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 109972 | 0.67 | 0.704915 |
Target: 5'- -aGCGUauACGGGAGcCCCGuccugacaCCUCUCCAa -3' miRNA: 3'- acCGCG--UGCCUUUaGGGC--------GGAGAGGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 98334 | 0.68 | 0.688853 |
Target: 5'- cGGUgucaucaguaucauuGCGCGGAAAUCUucacaCGCCUCUUUg -3' miRNA: 3'- aCCG---------------CGUGCCUUUAGG-----GCGGAGAGGu -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 73504 | 0.68 | 0.67875 |
Target: 5'- gGGCGCGCGGAuaauuuuuAGUCCCaggggcacgacuagaGgUUCUCCc -3' miRNA: 3'- aCCGCGUGCCU--------UUAGGG---------------CgGAGAGGu -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 40491 | 0.7 | 0.562894 |
Target: 5'- uUGGCGa--GGGAGUCCUGCCcgUCCGc -3' miRNA: 3'- -ACCGCgugCCUUUAGGGCGGagAGGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 104808 | 0.76 | 0.262694 |
Target: 5'- cGGCGCACGGAGGagCC-CCUCUgCAc -3' miRNA: 3'- aCCGCGUGCCUUUagGGcGGAGAgGU- -5' |
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13104 | 5' | -58.2 | NC_003401.1 | + | 15177 | 1.08 | 0.001606 |
Target: 5'- gUGGCGCACGGAAAUCCCGCCUCUCCAg -3' miRNA: 3'- -ACCGCGUGCCUUUAGGGCGGAGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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