Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13106 | 3' | -55.7 | NC_003401.1 | + | 66321 | 0.66 | 0.921694 |
Target: 5'- cGUUUGuGUGgaGCGUGccaauuuuACGGGGUCUUGUc -3' miRNA: 3'- aCAGAC-CAC--UGCGC--------UGCUCCAGAGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 71859 | 0.66 | 0.921694 |
Target: 5'- --cCUGcuUGAUGCGugGAGGUCgUGUg -3' miRNA: 3'- acaGACc-ACUGCGCugCUCCAGaGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 38084 | 0.67 | 0.877124 |
Target: 5'- gGUCUGGUGGuCGUGACGcg--CUUGUu -3' miRNA: 3'- aCAGACCACU-GCGCUGCuccaGAGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 107077 | 0.67 | 0.869852 |
Target: 5'- gGUgUGG-GGUGCGGCGAGGccgacUCUCGg -3' miRNA: 3'- aCAgACCaCUGCGCUGCUCC-----AGAGCg -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 28156 | 0.67 | 0.862366 |
Target: 5'- ----cGGUGGCGCGACGGGcGgugCGUa -3' miRNA: 3'- acagaCCACUGCGCUGCUC-CagaGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 117926 | 0.67 | 0.854673 |
Target: 5'- cGgcgGG-GuCGCGGCGAGGUCaCGCc -3' miRNA: 3'- aCagaCCaCuGCGCUGCUCCAGaGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 21509 | 0.68 | 0.830413 |
Target: 5'- -aUUUGG-GACGCGcACG-GGUCcCGCg -3' miRNA: 3'- acAGACCaCUGCGC-UGCuCCAGaGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 107014 | 0.68 | 0.821956 |
Target: 5'- cGUCgGGUGugGCGcCGuGGcUCUCu- -3' miRNA: 3'- aCAGaCCACugCGCuGCuCC-AGAGcg -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 71441 | 0.69 | 0.795583 |
Target: 5'- gGUCUGG-GugGCGugGAuugcacggggacGGUCggugUGCc -3' miRNA: 3'- aCAGACCaCugCGCugCU------------CCAGa---GCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 124508 | 0.7 | 0.748801 |
Target: 5'- gGUCUcugGGUGACGCagGGCcguccuauaGAGG-CUCGCg -3' miRNA: 3'- aCAGA---CCACUGCG--CUG---------CUCCaGAGCG- -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 68704 | 0.72 | 0.628247 |
Target: 5'- gUGUUUGGgGGCGUGGCGucGUCUCa- -3' miRNA: 3'- -ACAGACCaCUGCGCUGCucCAGAGcg -5' |
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13106 | 3' | -55.7 | NC_003401.1 | + | 18511 | 1.12 | 0.001793 |
Target: 5'- gUGUCUGGUGACGCGACGAGGUCUCGCg -3' miRNA: 3'- -ACAGACCACUGCGCUGCUCCAGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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