miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13106 3' -55.7 NC_003401.1 + 71859 0.66 0.921694
Target:  5'- --cCUGcuUGAUGCGugGAGGUCgUGUg -3'
miRNA:   3'- acaGACc-ACUGCGCugCUCCAGaGCG- -5'
13106 3' -55.7 NC_003401.1 + 66321 0.66 0.921694
Target:  5'- cGUUUGuGUGgaGCGUGccaauuuuACGGGGUCUUGUc -3'
miRNA:   3'- aCAGAC-CAC--UGCGC--------UGCUCCAGAGCG- -5'
13106 3' -55.7 NC_003401.1 + 38084 0.67 0.877124
Target:  5'- gGUCUGGUGGuCGUGACGcg--CUUGUu -3'
miRNA:   3'- aCAGACCACU-GCGCUGCuccaGAGCG- -5'
13106 3' -55.7 NC_003401.1 + 107077 0.67 0.869852
Target:  5'- gGUgUGG-GGUGCGGCGAGGccgacUCUCGg -3'
miRNA:   3'- aCAgACCaCUGCGCUGCUCC-----AGAGCg -5'
13106 3' -55.7 NC_003401.1 + 28156 0.67 0.862366
Target:  5'- ----cGGUGGCGCGACGGGcGgugCGUa -3'
miRNA:   3'- acagaCCACUGCGCUGCUC-CagaGCG- -5'
13106 3' -55.7 NC_003401.1 + 117926 0.67 0.854673
Target:  5'- cGgcgGG-GuCGCGGCGAGGUCaCGCc -3'
miRNA:   3'- aCagaCCaCuGCGCUGCUCCAGaGCG- -5'
13106 3' -55.7 NC_003401.1 + 21509 0.68 0.830413
Target:  5'- -aUUUGG-GACGCGcACG-GGUCcCGCg -3'
miRNA:   3'- acAGACCaCUGCGC-UGCuCCAGaGCG- -5'
13106 3' -55.7 NC_003401.1 + 107014 0.68 0.821956
Target:  5'- cGUCgGGUGugGCGcCGuGGcUCUCu- -3'
miRNA:   3'- aCAGaCCACugCGCuGCuCC-AGAGcg -5'
13106 3' -55.7 NC_003401.1 + 71441 0.69 0.795583
Target:  5'- gGUCUGG-GugGCGugGAuugcacggggacGGUCggugUGCc -3'
miRNA:   3'- aCAGACCaCugCGCugCU------------CCAGa---GCG- -5'
13106 3' -55.7 NC_003401.1 + 124508 0.7 0.748801
Target:  5'- gGUCUcugGGUGACGCagGGCcguccuauaGAGG-CUCGCg -3'
miRNA:   3'- aCAGA---CCACUGCG--CUG---------CUCCaGAGCG- -5'
13106 3' -55.7 NC_003401.1 + 68704 0.72 0.628247
Target:  5'- gUGUUUGGgGGCGUGGCGucGUCUCa- -3'
miRNA:   3'- -ACAGACCaCUGCGCUGCucCAGAGcg -5'
13106 3' -55.7 NC_003401.1 + 18511 1.12 0.001793
Target:  5'- gUGUCUGGUGACGCGACGAGGUCUCGCg -3'
miRNA:   3'- -ACAGACCACUGCGCUGCUCCAGAGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.