Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13107 | 3' | -61.7 | NC_003401.1 | + | 18963 | 0.97 | 0.005575 |
Target: 5'- aUCCGCGCGCUCGA-CACGGCGGGUACu -3' miRNA: 3'- -AGGCGCGCGAGCUgGUGCCGCCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 21628 | 0.75 | 0.208643 |
Target: 5'- -aCGCGCaGCggaCGGCCGCGGCaccuucGGGUGCg -3' miRNA: 3'- agGCGCG-CGa--GCUGGUGCCG------CCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 21773 | 0.75 | 0.208643 |
Target: 5'- gUCCGCuGCGCgugccgcggCGACCACGGCGaGcUGCa -3' miRNA: 3'- -AGGCG-CGCGa--------GCUGGUGCCGC-CcAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 8044 | 0.73 | 0.269818 |
Target: 5'- gCgGCGUGuCUCGACCGCGGgguccucacgGGGUGCg -3' miRNA: 3'- aGgCGCGC-GAGCUGGUGCCg---------CCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 124411 | 0.72 | 0.308895 |
Target: 5'- gCCcCGUGCUUGACCcacggGCGGCGGGa-- -3' miRNA: 3'- aGGcGCGCGAGCUGG-----UGCCGCCCaug -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 105840 | 0.72 | 0.315812 |
Target: 5'- cCCGUGgGCUgucCGuACUcguACGGCGGGUGCu -3' miRNA: 3'- aGGCGCgCGA---GC-UGG---UGCCGCCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 15721 | 0.7 | 0.380876 |
Target: 5'- cUCCGCGUGUUCuccugccugcuggaGGCCGCGGCcaGGGa-- -3' miRNA: 3'- -AGGCGCGCGAG--------------CUGGUGCCG--CCCaug -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 51753 | 0.7 | 0.416179 |
Target: 5'- gCUGCGCGCaaccgcgaGGCCucgaACGGCGGGgACg -3' miRNA: 3'- aGGCGCGCGag------CUGG----UGCCGCCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 44656 | 0.69 | 0.441088 |
Target: 5'- gUCCGCGCGCUCGuuuGCUAaguUGGUggucuuaGGGUAa -3' miRNA: 3'- -AGGCGCGCGAGC---UGGU---GCCG-------CCCAUg -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 26914 | 0.69 | 0.441962 |
Target: 5'- aCUGUGgGCUCGGgCA-GGCGGaGUACu -3' miRNA: 3'- aGGCGCgCGAGCUgGUgCCGCC-CAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 22628 | 0.69 | 0.468626 |
Target: 5'- cUCGcCGUGCUCGGCCACGGUugacGGcGUcCa -3' miRNA: 3'- aGGC-GCGCGAGCUGGUGCCG----CC-CAuG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 132499 | 0.68 | 0.514797 |
Target: 5'- gCCGCGgGCcCGGgC-CGGCGGG-GCg -3' miRNA: 3'- aGGCGCgCGaGCUgGuGCCGCCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 23260 | 0.68 | 0.543372 |
Target: 5'- uUCCGUGUGUUUcgcgGGCCGgGGUcGGUACg -3' miRNA: 3'- -AGGCGCGCGAG----CUGGUgCCGcCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 132443 | 0.67 | 0.562709 |
Target: 5'- cCCgGCGCGCg-GGCC-CGGgGGGcGCg -3' miRNA: 3'- aGG-CGCGCGagCUGGuGCCgCCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 48372 | 0.67 | 0.572447 |
Target: 5'- cCUGgGCGUUCGAgCgCACGGUGGuGUGu -3' miRNA: 3'- aGGCgCGCGAGCU-G-GUGCCGCC-CAUg -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 132403 | 0.67 | 0.572447 |
Target: 5'- cCCGgGCGCaagauggCGGCCGCGGCccGGcgGCg -3' miRNA: 3'- aGGCgCGCGa------GCUGGUGCCGc-CCa-UG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 105991 | 0.67 | 0.572447 |
Target: 5'- gCCGCGCGCcUGGCCAaGGCGcuuGG-GCg -3' miRNA: 3'- aGGCGCGCGaGCUGGUgCCGC---CCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 58997 | 0.67 | 0.582226 |
Target: 5'- aUCCugucCGCGCUUGACCG-GGCcaGGUACc -3' miRNA: 3'- -AGGc---GCGCGAGCUGGUgCCGc-CCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 14331 | 0.67 | 0.592037 |
Target: 5'- cUCCG-GCGC-CGGCaGgGGCGGGaGCa -3' miRNA: 3'- -AGGCgCGCGaGCUGgUgCCGCCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 85692 | 0.67 | 0.592037 |
Target: 5'- uUCUGCGCGC-CaGACuUAUGGCGuGUGCu -3' miRNA: 3'- -AGGCGCGCGaG-CUG-GUGCCGCcCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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