miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13107 5' -55.3 NC_003401.1 + 22196 0.66 0.926406
Target:  5'- cGG-UGUUGCGGUuGCCuuuGAGCGCGc- -3'
miRNA:   3'- cCCaACAGCGCCAcUGG---CUUGCGCau -5'
13107 5' -55.3 NC_003401.1 + 121446 0.66 0.926406
Target:  5'- gGGGUgGUCcCGGUGAgUCGGGCGgGg- -3'
miRNA:   3'- -CCCAaCAGcGCCACU-GGCUUGCgCau -5'
13107 5' -55.3 NC_003401.1 + 125411 0.66 0.920919
Target:  5'- cGGGcgUGUCGUgaggGGUcucucuaagaaGACCGAGCGCc-- -3'
miRNA:   3'- -CCCa-ACAGCG----CCA-----------CUGGCUUGCGcau -5'
13107 5' -55.3 NC_003401.1 + 70154 0.66 0.920919
Target:  5'- cGGGUUG-CGUGG-GACugucuCGGugGUGUGa -3'
miRNA:   3'- -CCCAACaGCGCCaCUG-----GCUugCGCAU- -5'
13107 5' -55.3 NC_003401.1 + 49240 0.66 0.920919
Target:  5'- -aGUgGUCGCGGUGuauacCCGAacaaACGCGg- -3'
miRNA:   3'- ccCAaCAGCGCCACu----GGCU----UGCGCau -5'
13107 5' -55.3 NC_003401.1 + 82547 0.67 0.860967
Target:  5'- gGGGgcgGUUGCGGUccugucGugCGccAACGCGUGu -3'
miRNA:   3'- -CCCaa-CAGCGCCA------CugGC--UUGCGCAU- -5'
13107 5' -55.3 NC_003401.1 + 8293 0.68 0.845226
Target:  5'- aGGGacacuuaCGUGGUGGCCGGAC-CGUAc -3'
miRNA:   3'- -CCCaaca---GCGCCACUGGCUUGcGCAU- -5'
13107 5' -55.3 NC_003401.1 + 22990 0.68 0.837059
Target:  5'- aGGGUUGuaauuUCGCGGggcccuuugGGCCccGCGCGUc -3'
miRNA:   3'- -CCCAAC-----AGCGCCa--------CUGGcuUGCGCAu -5'
13107 5' -55.3 NC_003401.1 + 117926 0.69 0.811462
Target:  5'- cGGcGggGUCGCGGcGAggucacgccgaaCCGGGCGCGg- -3'
miRNA:   3'- -CC-CaaCAGCGCCaCU------------GGCUUGCGCau -5'
13107 5' -55.3 NC_003401.1 + 89164 0.69 0.784389
Target:  5'- uGGGaacagUGUCGCcgggaacgGGUGACCGGGCGaGUc -3'
miRNA:   3'- -CCCa----ACAGCG--------CCACUGGCUUGCgCAu -5'
13107 5' -55.3 NC_003401.1 + 14205 0.69 0.765636
Target:  5'- aGGG-UGUCGgGGaccGGCCGggUGCGc- -3'
miRNA:   3'- -CCCaACAGCgCCa--CUGGCuuGCGCau -5'
13107 5' -55.3 NC_003401.1 + 28367 0.69 0.765636
Target:  5'- cGGG-UGUCGCGGUuaccgcaguGCUGAGCGCa-- -3'
miRNA:   3'- -CCCaACAGCGCCAc--------UGGCUUGCGcau -5'
13107 5' -55.3 NC_003401.1 + 40798 0.71 0.666176
Target:  5'- cGGGUUGUgcaugCGCGGaUGACagauggacuUGAGCGCGUu -3'
miRNA:   3'- -CCCAACA-----GCGCC-ACUG---------GCUUGCGCAu -5'
13107 5' -55.3 NC_003401.1 + 18928 1.09 0.003274
Target:  5'- uGGGUUGUCGCGGUGACCGAACGCGUAg -3'
miRNA:   3'- -CCCAACAGCGCCACUGGCUUGCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.