miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1311 3' -59.7 NC_001331.1 + 359 0.67 0.077188
Target:  5'- gCGGGCgGGCCgggGCuUGGgcggucgGCGCCAUCg -3'
miRNA:   3'- aGCUCGgCUGGga-CG-ACC-------UGCGGUAG- -5'
1311 3' -59.7 NC_001331.1 + 169 1.1 1.2e-05
Target:  5'- aUCGAGCCGACCCUGCUGGACGCCAUCg -3'
miRNA:   3'- -AGCUCGGCUGGGACGACCUGCGGUAG- -5'
1311 3' -59.7 NC_001331.1 + 5832 0.79 0.007178
Target:  5'- aCGGGCCGACC--GCUGGAUGaCCGUCu -3'
miRNA:   3'- aGCUCGGCUGGgaCGACCUGC-GGUAG- -5'
1311 3' -59.7 NC_001331.1 + 6330 0.66 0.082661
Target:  5'- aCGGuCCGACCCggcaacgucGCUGGcaucGCGuCCAUCa -3'
miRNA:   3'- aGCUcGGCUGGGa--------CGACC----UGC-GGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.