Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13111 | 5' | -46.3 | NC_003401.1 | + | 119583 | 0.68 | 0.99888 |
Target: 5'- gACCGAAGuccACUAACCGCUUaUGCgGg -3' miRNA: 3'- -UGGUUUUu--UGAUUGGUGAGgAUGgCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 95414 | 0.66 | 0.999825 |
Target: 5'- aGCUAGAAAGCUGACCuccGCgaagCCcgGCUGa -3' miRNA: 3'- -UGGUUUUUUGAUUGG---UGa---GGa-UGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 107610 | 0.66 | 0.999825 |
Target: 5'- uGCCAGAAGACgccaCGCUCCcggguccGCCGc -3' miRNA: 3'- -UGGUUUUUUGauugGUGAGGa------UGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 14167 | 0.66 | 0.999774 |
Target: 5'- cACCGAu--GCUc-CCGCcCCUGCCGg -3' miRNA: 3'- -UGGUUuuuUGAuuGGUGaGGAUGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 61069 | 0.66 | 0.999774 |
Target: 5'- uCCGgcuGAAGACUccgGGCCGUUCUUGCCGUu -3' miRNA: 3'- uGGU---UUUUUGA---UUGGUGAGGAUGGCA- -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 11500 | 0.67 | 0.99971 |
Target: 5'- gGCCAugauGAuAACUAACCGaacgcgucguCUCCUGCgGg -3' miRNA: 3'- -UGGU----UUuUUGAUUGGU----------GAGGAUGgCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 14966 | 0.67 | 0.99971 |
Target: 5'- gACCGAGcGACUGGCC-C-CCgUACCGc -3' miRNA: 3'- -UGGUUUuUUGAUUGGuGaGG-AUGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 121180 | 0.68 | 0.999091 |
Target: 5'- cGCCGGuu-GCUGcuGCCGCUCCUcCCc- -3' miRNA: 3'- -UGGUUuuuUGAU--UGGUGAGGAuGGca -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 11210 | 0.67 | 0.99971 |
Target: 5'- gGCCGGGAAAgaGAUCGCUCUgGCgCGUc -3' miRNA: 3'- -UGGUUUUUUgaUUGGUGAGGaUG-GCA- -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 64164 | 0.67 | 0.99971 |
Target: 5'- aACCA--GAGC-GGCCgGCUaCCUACCGUc -3' miRNA: 3'- -UGGUuuUUUGaUUGG-UGA-GGAUGGCA- -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 19771 | 0.67 | 0.99963 |
Target: 5'- gGCCGAGGAGCU-GCCGCagUUucGCCGg -3' miRNA: 3'- -UGGUUUUUUGAuUGGUGagGA--UGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 111351 | 0.67 | 0.999532 |
Target: 5'- aGCCAAGAAGCUGGgauucugcCCACg-UUGCCGa -3' miRNA: 3'- -UGGUUUUUUGAUU--------GGUGagGAUGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 68031 | 0.67 | 0.999412 |
Target: 5'- -aCGAAGAACUcguaCGCgUCCUGCCGg -3' miRNA: 3'- ugGUUUUUUGAuug-GUG-AGGAUGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 22851 | 0.67 | 0.999412 |
Target: 5'- gUCAGGugGCUAACCACgCCUGguuuCCGUc -3' miRNA: 3'- uGGUUUuuUGAUUGGUGaGGAU----GGCA- -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 18721 | 0.69 | 0.997095 |
Target: 5'- cACCAGGGAGCUGuACCGuggCgUGCCGUu -3' miRNA: 3'- -UGGUUUUUUGAU-UGGUga-GgAUGGCA- -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 84939 | 0.7 | 0.993408 |
Target: 5'- gGCCAAAcacuuuCUAauguccACCACUCaCUGCCGg -3' miRNA: 3'- -UGGUUUuuu---GAU------UGGUGAG-GAUGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 42407 | 0.71 | 0.986666 |
Target: 5'- gGCCAGcauugGAGACUuguGCCACUCCUcguacucgGCCa- -3' miRNA: 3'- -UGGUU-----UUUUGAu--UGGUGAGGA--------UGGca -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 27485 | 0.71 | 0.984837 |
Target: 5'- cGCCAGAAGACcAGCCGCaaCU-CCGUa -3' miRNA: 3'- -UGGUUUUUUGaUUGGUGagGAuGGCA- -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 115424 | 0.74 | 0.954772 |
Target: 5'- aGCCAccccGGAGCcgAGCCGCUCCcACCGg -3' miRNA: 3'- -UGGUu---UUUUGa-UUGGUGAGGaUGGCa -5' |
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13111 | 5' | -46.3 | NC_003401.1 | + | 63966 | 0.66 | 0.999898 |
Target: 5'- gGCgGAGAAGCUGACgGCUUUUcGCCa- -3' miRNA: 3'- -UGgUUUUUUGAUUGgUGAGGA-UGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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