Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 95802 | 0.66 | 0.999835 |
|
Target: 5'- cUCGUCgUUAGCCUU-UCCccgaauACCGCGa -3' miRNA: 3'- cAGCAGaAAUUGGAAuAGG------UGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 121731 | 0.67 | 0.999125 |
|
Target: 5'- cGUCGUUUUUGcaACC--AUCgCACCACGa -3' miRNA: 3'- -CAGCAGAAAU--UGGaaUAG-GUGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 44601 | 0.67 | 0.998919 |
|
Target: 5'- uGUCGUC-----CgUUGUCCACCGCGa -3' miRNA: 3'- -CAGCAGaaauuGgAAUAGGUGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 82349 | 0.68 | 0.998675 |
|
Target: 5'- -gUGUCUguggcgGGCgUUGUCCGCCGCu- -3' miRNA: 3'- caGCAGAaa----UUGgAAUAGGUGGUGua -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 18480 | 0.68 | 0.99764 |
|
Target: 5'- cGUCGUCggcggAGCUUaAUCgCACCACGg -3' miRNA: 3'- -CAGCAGaaa--UUGGAaUAG-GUGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 23878 | 0.68 | 0.997172 |
|
Target: 5'- cGUCGUgaUUGAC---GUCCGCCGCGUc -3' miRNA: 3'- -CAGCAgaAAUUGgaaUAGGUGGUGUA- -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 64598 | 0.7 | 0.992482 |
|
Target: 5'- cUUGUCUaUAGCCUUucuUCC-CCACAg -3' miRNA: 3'- cAGCAGAaAUUGGAAu--AGGuGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 52310 | 0.71 | 0.986847 |
|
Target: 5'- gGUCG-Cg--AACCgcGUCCGCCACAg -3' miRNA: 3'- -CAGCaGaaaUUGGaaUAGGUGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 97753 | 0.74 | 0.930344 |
|
Target: 5'- cGUCGUCUgguuACCgg--CCACCACGa -3' miRNA: 3'- -CAGCAGAaau-UGGaauaGGUGGUGUa -5' |
|||||||
| 13112 | 5' | -46.6 | NC_003401.1 | + | 27303 | 1.08 | 0.022382 |
|
Target: 5'- cGUCGUCUUUAACCUUAUCCACCACAUa -3' miRNA: 3'- -CAGCAGAAAUUGGAAUAGGUGGUGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home