miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13113 3' -53.5 NC_003401.1 + 15912 0.66 0.963131
Target:  5'- aCCGGGAGGauaaaguucuccCUGGCCGCGGcCUCCa--- -3'
miRNA:   3'- -GGUCUUCU------------GGUCGGCGUU-GAGGcauc -5'
13113 3' -53.5 NC_003401.1 + 88440 0.66 0.959561
Target:  5'- uCCAGGAGcaugccGCCGGUgGCAuccGCUUCGUu- -3'
miRNA:   3'- -GGUCUUC------UGGUCGgCGU---UGAGGCAuc -5'
13113 3' -53.5 NC_003401.1 + 123522 0.66 0.959561
Target:  5'- uCCAGggG-CCGcGCCGCGGCcaaaCCGc-- -3'
miRNA:   3'- -GGUCuuCuGGU-CGGCGUUGa---GGCauc -5'
13113 3' -53.5 NC_003401.1 + 63742 0.66 0.959561
Target:  5'- aUCGGAAGACCAuCCGCccuCUgCCGg-- -3'
miRNA:   3'- -GGUCUUCUGGUcGGCGuu-GA-GGCauc -5'
13113 3' -53.5 NC_003401.1 + 86654 0.66 0.951722
Target:  5'- uCCAGGAGAuguCCcGCCGCGugACUgugCGUGGa -3'
miRNA:   3'- -GGUCUUCU---GGuCGGCGU--UGAg--GCAUC- -5'
13113 3' -53.5 NC_003401.1 + 108611 0.66 0.951722
Target:  5'- -gAGAAGACCGuGCC--AGCUCCGaGGg -3'
miRNA:   3'- ggUCUUCUGGU-CGGcgUUGAGGCaUC- -5'
13113 3' -53.5 NC_003401.1 + 116525 0.66 0.951722
Target:  5'- gCCAGGAGccuuggcaGgCAGUCGCAcCUCUGUGc -3'
miRNA:   3'- -GGUCUUC--------UgGUCGGCGUuGAGGCAUc -5'
13113 3' -53.5 NC_003401.1 + 12465 0.66 0.951722
Target:  5'- aCAGAcgacgcacgAGGCCAGCUaCcACUUCGUGGc -3'
miRNA:   3'- gGUCU---------UCUGGUCGGcGuUGAGGCAUC- -5'
13113 3' -53.5 NC_003401.1 + 37964 0.66 0.951722
Target:  5'- aCCGGcgaGAGACCAGCaCGUGAUUuuGg-- -3'
miRNA:   3'- -GGUC---UUCUGGUCG-GCGUUGAggCauc -5'
13113 3' -53.5 NC_003401.1 + 118718 0.66 0.947445
Target:  5'- cCCAGA--ACCGGCCGCGccGCUUgGcGGc -3'
miRNA:   3'- -GGUCUucUGGUCGGCGU--UGAGgCaUC- -5'
13113 3' -53.5 NC_003401.1 + 132431 0.66 0.947445
Target:  5'- gCGGggGGCCggGGCCGCccccgggugccGCUCCGccGGg -3'
miRNA:   3'- gGUCuuCUGG--UCGGCGu----------UGAGGCa-UC- -5'
13113 3' -53.5 NC_003401.1 + 132709 0.66 0.947445
Target:  5'- aUCGGGAG-CCGcgcGCCGCGGCU-UGUGGg -3'
miRNA:   3'- -GGUCUUCuGGU---CGGCGUUGAgGCAUC- -5'
13113 3' -53.5 NC_003401.1 + 101470 0.67 0.942925
Target:  5'- cCUGGAGGGCC-GCCGCuuCUCgGa-- -3'
miRNA:   3'- -GGUCUUCUGGuCGGCGuuGAGgCauc -5'
13113 3' -53.5 NC_003401.1 + 48612 0.67 0.933145
Target:  5'- aCCGGAucGGACCaaucuAGCgGCAACggCCGcGGa -3'
miRNA:   3'- -GGUCU--UCUGG-----UCGgCGUUGa-GGCaUC- -5'
13113 3' -53.5 NC_003401.1 + 86568 0.67 0.927883
Target:  5'- cCUGGAGcGGCUgcgaaGGCCGCAGCUCauaGUAa -3'
miRNA:   3'- -GGUCUU-CUGG-----UCGGCGUUGAGg--CAUc -5'
13113 3' -53.5 NC_003401.1 + 128126 0.67 0.927883
Target:  5'- aCGGGAGGCgcuggaaaacgCAGCUGUAGCUCCu--- -3'
miRNA:   3'- gGUCUUCUG-----------GUCGGCGUUGAGGcauc -5'
13113 3' -53.5 NC_003401.1 + 41029 0.67 0.922371
Target:  5'- aCAGAGcGgCGGCCGUGGCUCaCGUGc -3'
miRNA:   3'- gGUCUUcUgGUCGGCGUUGAG-GCAUc -5'
13113 3' -53.5 NC_003401.1 + 21367 0.68 0.904347
Target:  5'- gUCAGGggguGGACCAGCUGCGuua-CGUGGu -3'
miRNA:   3'- -GGUCU----UCUGGUCGGCGUugagGCAUC- -5'
13113 3' -53.5 NC_003401.1 + 132403 0.68 0.904347
Target:  5'- cCCGGGcgcaAGAUggCGGCCGCGGC-CCGgcGg -3'
miRNA:   3'- -GGUCU----UCUG--GUCGGCGUUGaGGCauC- -5'
13113 3' -53.5 NC_003401.1 + 69746 0.68 0.890421
Target:  5'- gCGGAGaGCCGGCCGCcaugcggGACUCUGg-- -3'
miRNA:   3'- gGUCUUcUGGUCGGCG-------UUGAGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.