miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 119523 0.68 0.826345
Target:  5'- cGGACGCCGGCCggUcaaaa-AGCCACa -3'
miRNA:   3'- -CCUGCGGCUGGuuGcuggcgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 21828 0.68 0.817822
Target:  5'- uGGGCgggGCCGACCAcaggcGCGGCC-CGGCUg- -3'
miRNA:   3'- -CCUG---CGGCUGGU-----UGCUGGcGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 1478 0.68 0.817822
Target:  5'- gGGACGUcuaCGGCCAGaGACCaGCGAagcaCACa -3'
miRNA:   3'- -CCUGCG---GCUGGUUgCUGG-CGUUg---GUG- -5'
13114 3' -56.1 NC_003401.1 + 50824 0.68 0.812627
Target:  5'- cGGuuGCCGAaaccaguuuucgcaaCCAcCGuCCGUGACCACg -3'
miRNA:   3'- -CCugCGGCU---------------GGUuGCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 120245 0.68 0.809131
Target:  5'- uGGGCcCUGG-CAACaGACCGCAuCCACg -3'
miRNA:   3'- -CCUGcGGCUgGUUG-CUGGCGUuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 17218 0.68 0.809131
Target:  5'- aGGA-G-CGACCAACggaGACCGCcACCAUg -3'
miRNA:   3'- -CCUgCgGCUGGUUG---CUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 8690 0.68 0.798492
Target:  5'- cGGugGCUuACCuggcagaaauacGCGGCCGC-ACCGCc -3'
miRNA:   3'- -CCugCGGcUGGu-----------UGCUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 21169 0.68 0.792185
Target:  5'- -uGCGCCGAUCGugGgGCCGCcuguuaauuagauccACCACg -3'
miRNA:   3'- ccUGCGGCUGGUugC-UGGCGu--------------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 121931 0.68 0.791279
Target:  5'- gGGGCGCggGugCGGCGGCuggCGCGGCCGu -3'
miRNA:   3'- -CCUGCGg-CugGUUGCUG---GCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 132559 0.68 0.791279
Target:  5'- cGGCGCgCGGCUcccgaugccgGGCGGCCGCcGCCcgGCa -3'
miRNA:   3'- cCUGCG-GCUGG----------UUGCUGGCGuUGG--UG- -5'
13114 3' -56.1 NC_003401.1 + 20269 0.69 0.763452
Target:  5'- gGGACGCgGAC-----GCCGCGGCCAUu -3'
miRNA:   3'- -CCUGCGgCUGguugcUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125420 0.69 0.760608
Target:  5'- gGGGCcucguccucccaggGUgGGCCAACGGCCGguACCu- -3'
miRNA:   3'- -CCUG--------------CGgCUGGUUGCUGGCguUGGug -5'
13114 3' -56.1 NC_003401.1 + 78086 0.69 0.744306
Target:  5'- cGGCGCCG-CCAcCG-CUGCAACC-Cg -3'
miRNA:   3'- cCUGCGGCuGGUuGCuGGCGUUGGuG- -5'
13114 3' -56.1 NC_003401.1 + 28374 0.69 0.753932
Target:  5'- cGAUGCCGG-CAACGGCgGCGuauCCAUc -3'
miRNA:   3'- cCUGCGGCUgGUUGCUGgCGUu--GGUG- -5'
13114 3' -56.1 NC_003401.1 + 90732 0.69 0.753932
Target:  5'- aGGCGUCGucagGCCAACaGAcagcguacCCGCGGCCGCc -3'
miRNA:   3'- cCUGCGGC----UGGUUG-CU--------GGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 126454 0.69 0.763452
Target:  5'- cGGugGCCGugaUGACGACUGCGuuaaACgGCa -3'
miRNA:   3'- -CCugCGGCug-GUUGCUGGCGU----UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 58908 0.69 0.772855
Target:  5'- -aGCGUCGACCu-UGGCgGCAuACCACg -3'
miRNA:   3'- ccUGCGGCUGGuuGCUGgCGU-UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 69365 0.69 0.772855
Target:  5'- cGGGCGUCGAuugcgggaaaCCAgcauGCGuuCCGCAGCCcGCg -3'
miRNA:   3'- -CCUGCGGCU----------GGU----UGCu-GGCGUUGG-UG- -5'
13114 3' -56.1 NC_003401.1 + 119249 0.69 0.753932
Target:  5'- cGugGCCG-CCAACGcacccgguuaacGCCGguGCCGg -3'
miRNA:   3'- cCugCGGCuGGUUGC------------UGGCguUGGUg -5'
13114 3' -56.1 NC_003401.1 + 118211 0.69 0.772855
Target:  5'- cGGGCGCUGGgggugauauguuCUGAUGACCGCcGCCu- -3'
miRNA:   3'- -CCUGCGGCU------------GGUUGCUGGCGuUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.