Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 3' | -56.1 | NC_003401.1 | + | 80025 | 0.71 | 0.654365 |
Target: 5'- uGACcgccCCGGCCAccgagGCGuCUGCAACCGCa -3' miRNA: 3'- cCUGc---GGCUGGU-----UGCuGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117605 | 0.71 | 0.654365 |
Target: 5'- cGGccGCGgCGACCAAUGGCCGCcGCgGg -3' miRNA: 3'- -CC--UGCgGCUGGUUGCUGGCGuUGgUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 119922 | 0.71 | 0.633961 |
Target: 5'- cGGAgGCCG-UCGGCGuuucgGCCGCAACCcucGCg -3' miRNA: 3'- -CCUgCGGCuGGUUGC-----UGGCGUUGG---UG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23533 | 0.71 | 0.623753 |
Target: 5'- -cGCGCgCGACUGGCGACCGUgaaAACUAUg -3' miRNA: 3'- ccUGCG-GCUGGUUGCUGGCG---UUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 103885 | 0.71 | 0.633961 |
Target: 5'- cGACGuuGGCCGGCGAguugauugcguCCGUGuacGCCGCg -3' miRNA: 3'- cCUGCggCUGGUUGCU-----------GGCGU---UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 8874 | 0.71 | 0.623753 |
Target: 5'- gGGGCGCgG--CGugGACCGCAACCu- -3' miRNA: 3'- -CCUGCGgCugGUugCUGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 17175 | 0.71 | 0.623753 |
Target: 5'- aGACGCCGcGCCAGCGGaguCCGCAgggagagcucgaGCgGCg -3' miRNA: 3'- cCUGCGGC-UGGUUGCU---GGCGU------------UGgUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118430 | 0.7 | 0.714877 |
Target: 5'- cGGugGCCGGgCAGaGGCCGgcCGGCCAa -3' miRNA: 3'- -CCugCGGCUgGUUgCUGGC--GUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 13489 | 0.7 | 0.674698 |
Target: 5'- uGGACaacaCGAUCGACcugaACCGCGACCGCc -3' miRNA: 3'- -CCUGcg--GCUGGUUGc---UGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 20098 | 0.7 | 0.684817 |
Target: 5'- cGGucacCGCgGAgCCAAUGGCCGCGgcguCCGCg -3' miRNA: 3'- -CCu---GCGgCU-GGUUGCUGGCGUu---GGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 105210 | 0.7 | 0.694892 |
Target: 5'- uGugGCCcACCcuGGCGGCCGCAAUCu- -3' miRNA: 3'- cCugCGGcUGG--UUGCUGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118395 | 0.7 | 0.714877 |
Target: 5'- uGACGCCGGCgGguuCGACC-CAuugACCGCa -3' miRNA: 3'- cCUGCGGCUGgUu--GCUGGcGU---UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 85510 | 0.7 | 0.724769 |
Target: 5'- uGGAuCGCCGGCaGAUGG-CGCAGCaCACg -3' miRNA: 3'- -CCU-GCGGCUGgUUGCUgGCGUUG-GUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 72641 | 0.7 | 0.674698 |
Target: 5'- aGGGCGgccaCGGCCAA-GGCCGUGACgCGCg -3' miRNA: 3'- -CCUGCg---GCUGGUUgCUGGCGUUG-GUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118681 | 0.7 | 0.724769 |
Target: 5'- cGGugGgCCagggGGCCAGgGACCGCAGgCAg -3' miRNA: 3'- -CCugC-GG----CUGGUUgCUGGCGUUgGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 90732 | 0.69 | 0.753932 |
Target: 5'- aGGCGUCGucagGCCAACaGAcagcguacCCGCGGCCGCc -3' miRNA: 3'- cCUGCGGC----UGGUUG-CU--------GGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118211 | 0.69 | 0.772855 |
Target: 5'- cGGGCGCUGGgggugauauguuCUGAUGACCGCcGCCu- -3' miRNA: 3'- -CCUGCGGCU------------GGUUGCUGGCGuUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 78086 | 0.69 | 0.744306 |
Target: 5'- cGGCGCCG-CCAcCG-CUGCAACC-Cg -3' miRNA: 3'- cCUGCGGCuGGUuGCuGGCGUUGGuG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 69365 | 0.69 | 0.772855 |
Target: 5'- cGGGCGUCGAuugcgggaaaCCAgcauGCGuuCCGCAGCCcGCg -3' miRNA: 3'- -CCUGCGGCU----------GGU----UGCu-GGCGUUGG-UG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 126454 | 0.69 | 0.763452 |
Target: 5'- cGGugGCCGugaUGACGACUGCGuuaaACgGCa -3' miRNA: 3'- -CCugCGGCug-GUUGCUGGCGU----UGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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