miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 49874 0.67 0.834693
Target:  5'- cGGGCGUcaCGGCCGAaggGACCgaggGCAACcCACu -3'
miRNA:   3'- -CCUGCG--GCUGGUUg--CUGG----CGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 50824 0.68 0.812627
Target:  5'- cGGuuGCCGAaaccaguuuucgcaaCCAcCGuCCGUGACCACg -3'
miRNA:   3'- -CCugCGGCU---------------GGUuGCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 58370 0.68 0.826345
Target:  5'- uGGGCGCCGAuuuuacCCAcgcGCGugGCaGCAGCCAa -3'
miRNA:   3'- -CCUGCGGCU------GGU---UGC--UGgCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 58908 0.69 0.772855
Target:  5'- -aGCGUCGACCu-UGGCgGCAuACCACg -3'
miRNA:   3'- ccUGCGGCUGGuuGCUGgCGU-UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 61177 0.66 0.900799
Target:  5'- --cUGCCuGAUC-ACGGgCGCGACCACc -3'
miRNA:   3'- ccuGCGG-CUGGuUGCUgGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 69365 0.69 0.772855
Target:  5'- cGGGCGUCGAuugcgggaaaCCAgcauGCGuuCCGCAGCCcGCg -3'
miRNA:   3'- -CCUGCGGCU----------GGU----UGCu-GGCGUUGG-UG- -5'
13114 3' -56.1 NC_003401.1 + 69449 0.67 0.873543
Target:  5'- -uAUGCgGGCCAGgGGCCGCAgaugucgaACCGg -3'
miRNA:   3'- ccUGCGgCUGGUUgCUGGCGU--------UGGUg -5'
13114 3' -56.1 NC_003401.1 + 72072 0.66 0.907044
Target:  5'- -uAUG-CGACCAAaauUGACCGCAaagaauACCACg -3'
miRNA:   3'- ccUGCgGCUGGUU---GCUGGCGU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 72478 0.66 0.907044
Target:  5'- -cGCGCgucaCGGCCu-UGGCCGUGGCCGCc -3'
miRNA:   3'- ccUGCG----GCUGGuuGCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 72641 0.7 0.674698
Target:  5'- aGGGCGgccaCGGCCAA-GGCCGUGACgCGCg -3'
miRNA:   3'- -CCUGCg---GCUGGUUgCUGGCGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 73392 0.67 0.85083
Target:  5'- cGGAgCGCCGACgGAUGAggUGUAuuACCACa -3'
miRNA:   3'- -CCU-GCGGCUGgUUGCUg-GCGU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 78065 0.72 0.583059
Target:  5'- cGugGCCguauGugCGuCGACCGCGGCCAg -3'
miRNA:   3'- cCugCGG----CugGUuGCUGGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 78086 0.69 0.744306
Target:  5'- cGGCGCCG-CCAcCG-CUGCAACC-Cg -3'
miRNA:   3'- cCUGCGGCuGGUuGCuGGCGUUGGuG- -5'
13114 3' -56.1 NC_003401.1 + 80025 0.71 0.654365
Target:  5'- uGACcgccCCGGCCAccgagGCGuCUGCAACCGCa -3'
miRNA:   3'- cCUGc---GGCUGGU-----UGCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 82386 0.75 0.411902
Target:  5'- uGGCGCaCGACag--GACCGCAACCGCc -3'
miRNA:   3'- cCUGCG-GCUGguugCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 85510 0.7 0.724769
Target:  5'- uGGAuCGCCGGCaGAUGG-CGCAGCaCACg -3'
miRNA:   3'- -CCU-GCGGCUGgUUGCUgGCGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 88600 0.68 0.829706
Target:  5'- cGGAUGCC-ACCGGCGGCaugcuccuggacguaCGCAacgagguaACCGCc -3'
miRNA:   3'- -CCUGCGGcUGGUUGCUG---------------GCGU--------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 90732 0.69 0.753932
Target:  5'- aGGCGUCGucagGCCAACaGAcagcguacCCGCGGCCGCc -3'
miRNA:   3'- cCUGCGGC----UGGUUG-CU--------GGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 94389 0.76 0.370032
Target:  5'- uGGCGCUGauGCCAACGGCCGgAACCu- -3'
miRNA:   3'- cCUGCGGC--UGGUUGCUGGCgUUGGug -5'
13114 3' -56.1 NC_003401.1 + 96552 0.66 0.880691
Target:  5'- uGugGaCCGuuugaACCAACGGCC-CGACCGg -3'
miRNA:   3'- cCugC-GGC-----UGGUUGCUGGcGUUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.