Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 3' | -56.1 | NC_003401.1 | + | 100150 | 0.66 | 0.90643 |
Target: 5'- ---aGCUuuaucaaGACCAACGAguggaCCGCGGCCAUc -3' miRNA: 3'- ccugCGG-------CUGGUUGCU-----GGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 100786 | 0.66 | 0.880691 |
Target: 5'- uGACGUCacauCCGGCGAUCGCGGCgGg -3' miRNA: 3'- cCUGCGGcu--GGUUGCUGGCGUUGgUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 101700 | 0.71 | 0.664544 |
Target: 5'- cGGGCGCUGAagGAacaGAUCGCcAACCACc -3' miRNA: 3'- -CCUGCGGCUggUUg--CUGGCG-UUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 103096 | 0.79 | 0.250463 |
Target: 5'- cGGACGCUGAUCAcccaauucaACGGCCacgaGCGACCGCc -3' miRNA: 3'- -CCUGCGGCUGGU---------UGCUGG----CGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 103724 | 0.67 | 0.834693 |
Target: 5'- cGGAcgcaaucaacuCGCCGGCCAACG-UCGUGACUc- -3' miRNA: 3'- -CCU-----------GCGGCUGGUUGCuGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 103885 | 0.71 | 0.633961 |
Target: 5'- cGACGuuGGCCGGCGAguugauugcguCCGUGuacGCCGCg -3' miRNA: 3'- cCUGCggCUGGUUGCU-----------GGCGU---UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 104701 | 0.68 | 0.782134 |
Target: 5'- cGGugGCCagacuGACCAaucaccuucACGugCGCGGCaGCg -3' miRNA: 3'- -CCugCGG-----CUGGU---------UGCugGCGUUGgUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 105210 | 0.7 | 0.694892 |
Target: 5'- uGugGCCcACCcuGGCGGCCGCAAUCu- -3' miRNA: 3'- cCugCGGcUGG--UUGCUGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 108828 | 0.74 | 0.47517 |
Target: 5'- uGGCGCCGACCGuccCGugCgGCAACC-Cg -3' miRNA: 3'- cCUGCGGCUGGUu--GCugG-CGUUGGuG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 109043 | 0.67 | 0.866179 |
Target: 5'- -uACGCCucuaaCAACGACCggccgauaucguGCAGCCGCg -3' miRNA: 3'- ccUGCGGcug--GUUGCUGG------------CGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 112121 | 0.69 | 0.772855 |
Target: 5'- uGGAUGCCGGuCgCGugGACUGgGGCC-Cg -3' miRNA: 3'- -CCUGCGGCU-G-GUugCUGGCgUUGGuG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 116727 | 0.66 | 0.894323 |
Target: 5'- -uGCGCaauGCCAGCcucCCGCGACCAUg -3' miRNA: 3'- ccUGCGgc-UGGUUGcu-GGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117605 | 0.71 | 0.654365 |
Target: 5'- cGGccGCGgCGACCAAUGGCCGCcGCgGg -3' miRNA: 3'- -CC--UGCgGCUGGUUGCUGGCGuUGgUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117763 | 0.73 | 0.552881 |
Target: 5'- -cGCGgCGGCCAugGucGCCGCGGCCGu -3' miRNA: 3'- ccUGCgGCUGGUugC--UGGCGUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117861 | 0.66 | 0.899522 |
Target: 5'- cGGCGCCaaagagcGGCCGAUGgguacgcGCgGCGACCAUc -3' miRNA: 3'- cCUGCGG-------CUGGUUGC-------UGgCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117896 | 0.67 | 0.85083 |
Target: 5'- cGGGCGCgGGgguUCGGCGGCgGUGgcACCGCg -3' miRNA: 3'- -CCUGCGgCU---GGUUGCUGgCGU--UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118106 | 0.66 | 0.886936 |
Target: 5'- uGGGgGCCGcgcgccACCAugGGCCcCAgauuuggGCCGCg -3' miRNA: 3'- -CCUgCGGC------UGGUugCUGGcGU-------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118211 | 0.69 | 0.772855 |
Target: 5'- cGGGCGCUGGgggugauauguuCUGAUGACCGCcGCCu- -3' miRNA: 3'- -CCUGCGGCU------------GGUUGCUGGCGuUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118395 | 0.7 | 0.714877 |
Target: 5'- uGACGCCGGCgGguuCGACC-CAuugACCGCa -3' miRNA: 3'- cCUGCGGCUGgUu--GCUGGcGU---UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118430 | 0.7 | 0.714877 |
Target: 5'- cGGugGCCGGgCAGaGGCCGgcCGGCCAa -3' miRNA: 3'- -CCugCGGCUgGUUgCUGGC--GUUGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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