miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 122671 0.68 0.809131
Target:  5'- uGACGuuGACCAccACG-CC-CAAUCACa -3'
miRNA:   3'- cCUGCggCUGGU--UGCuGGcGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 122570 0.67 0.866179
Target:  5'- --cCGCCGcGCCggUGAgCCGCGGCCc- -3'
miRNA:   3'- ccuGCGGC-UGGuuGCU-GGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 122540 0.67 0.866179
Target:  5'- cGGuuCGCCGGCgAcaagguaagGgGGCCGCGGCgCGCg -3'
miRNA:   3'- -CCu-GCGGCUGgU---------UgCUGGCGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 122098 0.72 0.562894
Target:  5'- uGGcACgGCCGcGCCAGCcGCCGCAcCCGCg -3'
miRNA:   3'- -CC-UG-CGGC-UGGUUGcUGGCGUuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 121931 0.68 0.791279
Target:  5'- gGGGCGCggGugCGGCGGCuggCGCGGCCGu -3'
miRNA:   3'- -CCUGCGg-CugGUUGCUG---GCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 120245 0.68 0.809131
Target:  5'- uGGGCcCUGG-CAACaGACCGCAuCCACg -3'
miRNA:   3'- -CCUGcGGCUgGUUG-CUGGCGUuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119922 0.71 0.633961
Target:  5'- cGGAgGCCG-UCGGCGuuucgGCCGCAACCcucGCg -3'
miRNA:   3'- -CCUgCGGCuGGUUGC-----UGGCGUUGG---UG- -5'
13114 3' -56.1 NC_003401.1 + 119889 0.67 0.858607
Target:  5'- cGGcCGCCG-CCGAguCGGuuGCcACCACc -3'
miRNA:   3'- -CCuGCGGCuGGUU--GCUggCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119731 0.72 0.613551
Target:  5'- uGGugGCa-ACCGAcuCGGCgGCGGCCGCg -3'
miRNA:   3'- -CCugCGgcUGGUU--GCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119523 0.68 0.826345
Target:  5'- cGGACGCCGGCCggUcaaaa-AGCCACa -3'
miRNA:   3'- -CCUGCGGCUGGuuGcuggcgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119249 0.69 0.753932
Target:  5'- cGugGCCG-CCAACGcacccgguuaacGCCGguGCCGg -3'
miRNA:   3'- cCugCGGCuGGUUGC------------UGGCguUGGUg -5'
13114 3' -56.1 NC_003401.1 + 119226 0.66 0.900799
Target:  5'- aGGugGgUGACUgguuGCGcCUGCGACCAa -3'
miRNA:   3'- -CCugCgGCUGGu---UGCuGGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 119098 0.67 0.842857
Target:  5'- gGGuGCGUuggCGGCC-ACGACCuuGGCCACg -3'
miRNA:   3'- -CC-UGCG---GCUGGuUGCUGGcgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 118880 0.66 0.900799
Target:  5'- -cGCGCCG-CCaAGCGGC-GCGGCCGg -3'
miRNA:   3'- ccUGCGGCuGG-UUGCUGgCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 118681 0.7 0.724769
Target:  5'- cGGugGgCCagggGGCCAGgGACCGCAGgCAg -3'
miRNA:   3'- -CCugC-GG----CUGGUUgCUGGCGUUgGUg -5'
13114 3' -56.1 NC_003401.1 + 118589 0.66 0.900799
Target:  5'- ---gGCCGGCCGGCcucuGCC-CGGCCACc -3'
miRNA:   3'- ccugCGGCUGGUUGc---UGGcGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 118539 0.69 0.744306
Target:  5'- --cCGCCGGCguCAGCGucGCCGCAggccgaGCCGCa -3'
miRNA:   3'- ccuGCGGCUG--GUUGC--UGGCGU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 118430 0.7 0.714877
Target:  5'- cGGugGCCGGgCAGaGGCCGgcCGGCCAa -3'
miRNA:   3'- -CCugCGGCUgGUUgCUGGC--GUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 118395 0.7 0.714877
Target:  5'- uGACGCCGGCgGguuCGACC-CAuugACCGCa -3'
miRNA:   3'- cCUGCGGCUGgUu--GCUGGcGU---UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 118211 0.69 0.772855
Target:  5'- cGGGCGCUGGgggugauauguuCUGAUGACCGCcGCCu- -3'
miRNA:   3'- -CCUGCGGCU------------GGUUGCUGGCGuUGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.