miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 118106 0.66 0.886936
Target:  5'- uGGGgGCCGcgcgccACCAugGGCCcCAgauuuggGCCGCg -3'
miRNA:   3'- -CCUgCGGC------UGGUugCUGGcGU-------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 117896 0.67 0.85083
Target:  5'- cGGGCGCgGGgguUCGGCGGCgGUGgcACCGCg -3'
miRNA:   3'- -CCUGCGgCU---GGUUGCUGgCGU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 117861 0.66 0.899522
Target:  5'- cGGCGCCaaagagcGGCCGAUGgguacgcGCgGCGACCAUc -3'
miRNA:   3'- cCUGCGG-------CUGGUUGC-------UGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 117763 0.73 0.552881
Target:  5'- -cGCGgCGGCCAugGucGCCGCGGCCGu -3'
miRNA:   3'- ccUGCgGCUGGUugC--UGGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 117605 0.71 0.654365
Target:  5'- cGGccGCGgCGACCAAUGGCCGCcGCgGg -3'
miRNA:   3'- -CC--UGCgGCUGGUUGCUGGCGuUGgUg -5'
13114 3' -56.1 NC_003401.1 + 116727 0.66 0.894323
Target:  5'- -uGCGCaauGCCAGCcucCCGCGACCAUg -3'
miRNA:   3'- ccUGCGgc-UGGUUGcu-GGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 112121 0.69 0.772855
Target:  5'- uGGAUGCCGGuCgCGugGACUGgGGCC-Cg -3'
miRNA:   3'- -CCUGCGGCU-G-GUugCUGGCgUUGGuG- -5'
13114 3' -56.1 NC_003401.1 + 109043 0.67 0.866179
Target:  5'- -uACGCCucuaaCAACGACCggccgauaucguGCAGCCGCg -3'
miRNA:   3'- ccUGCGGcug--GUUGCUGG------------CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 108828 0.74 0.47517
Target:  5'- uGGCGCCGACCGuccCGugCgGCAACC-Cg -3'
miRNA:   3'- cCUGCGGCUGGUu--GCugG-CGUUGGuG- -5'
13114 3' -56.1 NC_003401.1 + 105210 0.7 0.694892
Target:  5'- uGugGCCcACCcuGGCGGCCGCAAUCu- -3'
miRNA:   3'- cCugCGGcUGG--UUGCUGGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 104701 0.68 0.782134
Target:  5'- cGGugGCCagacuGACCAaucaccuucACGugCGCGGCaGCg -3'
miRNA:   3'- -CCugCGG-----CUGGU---------UGCugGCGUUGgUG- -5'
13114 3' -56.1 NC_003401.1 + 103885 0.71 0.633961
Target:  5'- cGACGuuGGCCGGCGAguugauugcguCCGUGuacGCCGCg -3'
miRNA:   3'- cCUGCggCUGGUUGCU-----------GGCGU---UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 103724 0.67 0.834693
Target:  5'- cGGAcgcaaucaacuCGCCGGCCAACG-UCGUGACUc- -3'
miRNA:   3'- -CCU-----------GCGGCUGGUUGCuGGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 103096 0.79 0.250463
Target:  5'- cGGACGCUGAUCAcccaauucaACGGCCacgaGCGACCGCc -3'
miRNA:   3'- -CCUGCGGCUGGU---------UGCUGG----CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 101700 0.71 0.664544
Target:  5'- cGGGCGCUGAagGAacaGAUCGCcAACCACc -3'
miRNA:   3'- -CCUGCGGCUggUUg--CUGGCG-UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 100786 0.66 0.880691
Target:  5'- uGACGUCacauCCGGCGAUCGCGGCgGg -3'
miRNA:   3'- cCUGCGGcu--GGUUGCUGGCGUUGgUg -5'
13114 3' -56.1 NC_003401.1 + 100150 0.66 0.90643
Target:  5'- ---aGCUuuaucaaGACCAACGAguggaCCGCGGCCAUc -3'
miRNA:   3'- ccugCGG-------CUGGUUGCU-----GGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 96552 0.66 0.880691
Target:  5'- uGugGaCCGuuugaACCAACGGCC-CGACCGg -3'
miRNA:   3'- cCugC-GGC-----UGGUUGCUGGcGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 94389 0.76 0.370032
Target:  5'- uGGCGCUGauGCCAACGGCCGgAACCu- -3'
miRNA:   3'- cCUGCGGC--UGGUUGCUGGCgUUGGug -5'
13114 3' -56.1 NC_003401.1 + 90732 0.69 0.753932
Target:  5'- aGGCGUCGucagGCCAACaGAcagcguacCCGCGGCCGCc -3'
miRNA:   3'- cCUGCGGC----UGGUUG-CU--------GGCGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.