Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 3' | -56.1 | NC_003401.1 | + | 42319 | 0.67 | 0.872816 |
Target: 5'- aGGCGCgucacguaauuugCGACCAGCGgguggagcgugGCCGCcACCAg -3' miRNA: 3'- cCUGCG-------------GCUGGUUGC-----------UGGCGuUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 41533 | 0.68 | 0.782134 |
Target: 5'- cGGACGCgGGCCuGCG-CC-CcACCACc -3' miRNA: 3'- -CCUGCGgCUGGuUGCuGGcGuUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 28374 | 0.69 | 0.753932 |
Target: 5'- cGAUGCCGG-CAACGGCgGCGuauCCAUc -3' miRNA: 3'- cCUGCGGCUgGUUGCUGgCGUu--GGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 28032 | 1.11 | 0.002119 |
Target: 5'- aGGACGCCGACCAACGACCGCAACCACc -3' miRNA: 3'- -CCUGCGGCUGGUUGCUGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23979 | 0.66 | 0.894323 |
Target: 5'- uGGcUGCCGccagcguCCAAUGGCCGC-GCCGg -3' miRNA: 3'- -CCuGCGGCu------GGUUGCUGGCGuUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23800 | 0.67 | 0.866179 |
Target: 5'- cGGCGCC-ACCugcCGGCCGCucGCgGCg -3' miRNA: 3'- cCUGCGGcUGGuu-GCUGGCGu-UGgUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23636 | 0.77 | 0.323763 |
Target: 5'- cGGGCGCCG-CgAGCGGCCGgCAgguggcGCCGCg -3' miRNA: 3'- -CCUGCGGCuGgUUGCUGGC-GU------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23549 | 0.67 | 0.873543 |
Target: 5'- uGGCGCUGGCgAAgauagUGGCCGCAGagCACg -3' miRNA: 3'- cCUGCGGCUGgUU-----GCUGGCGUUg-GUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23533 | 0.71 | 0.623753 |
Target: 5'- -cGCGCgCGACUGGCGACCGUgaaAACUAUg -3' miRNA: 3'- ccUGCG-GCUGGUUGCUGGCG---UUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 22793 | 0.67 | 0.873543 |
Target: 5'- uGGACGCCGucaACCGugG-CCGagcACgGCg -3' miRNA: 3'- -CCUGCGGC---UGGUugCuGGCgu-UGgUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 21828 | 0.68 | 0.817822 |
Target: 5'- uGGGCgggGCCGACCAcaggcGCGGCC-CGGCUg- -3' miRNA: 3'- -CCUG---CGGCUGGU-----UGCUGGcGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 21615 | 0.68 | 0.782134 |
Target: 5'- uGGuCGCCGcggcacgcgcaGCgGACGGCCGCGGCa-- -3' miRNA: 3'- -CCuGCGGC-----------UGgUUGCUGGCGUUGgug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 21169 | 0.68 | 0.792185 |
Target: 5'- -uGCGCCGAUCGugGgGCCGCcuguuaauuagauccACCACg -3' miRNA: 3'- ccUGCGGCUGGUugC-UGGCGu--------------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 20708 | 0.72 | 0.593197 |
Target: 5'- uGGCGuuGACCGGCcGCCGC--CCGCg -3' miRNA: 3'- cCUGCggCUGGUUGcUGGCGuuGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 20269 | 0.69 | 0.763452 |
Target: 5'- gGGACGCgGAC-----GCCGCGGCCAUu -3' miRNA: 3'- -CCUGCGgCUGguugcUGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 20098 | 0.7 | 0.684817 |
Target: 5'- cGGucacCGCgGAgCCAAUGGCCGCGgcguCCGCg -3' miRNA: 3'- -CCu---GCGgCU-GGUUGCUGGCGUu---GGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 19787 | 0.75 | 0.438391 |
Target: 5'- aGGGCGCgCGAUCggUGGCCGaggagcuGCCGCa -3' miRNA: 3'- -CCUGCG-GCUGGuuGCUGGCgu-----UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 18019 | 0.67 | 0.853965 |
Target: 5'- cGGAC-CCGuccugcccacccacACCGGCGGCCGCGuauugggggucuacGCCGa -3' miRNA: 3'- -CCUGcGGC--------------UGGUUGCUGGCGU--------------UGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 17218 | 0.68 | 0.809131 |
Target: 5'- aGGA-G-CGACCAACggaGACCGCcACCAUg -3' miRNA: 3'- -CCUgCgGCUGGUUG---CUGGCGuUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 17175 | 0.71 | 0.623753 |
Target: 5'- aGACGCCGcGCCAGCGGaguCCGCAgggagagcucgaGCgGCg -3' miRNA: 3'- cCUGCGGC-UGGUUGCU---GGCGU------------UGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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