miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 72641 0.7 0.674698
Target:  5'- aGGGCGgccaCGGCCAA-GGCCGUGACgCGCg -3'
miRNA:   3'- -CCUGCg---GCUGGUUgCUGGCGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 132753 0.76 0.394803
Target:  5'- gGGAgGCCGGCgGAgGACCGCcaugccgggcgcGGCCGCc -3'
miRNA:   3'- -CCUgCGGCUGgUUgCUGGCG------------UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 19787 0.75 0.438391
Target:  5'- aGGGCGCgCGAUCggUGGCCGaggagcuGCCGCa -3'
miRNA:   3'- -CCUGCG-GCUGGuuGCUGGCgu-----UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 122098 0.72 0.562894
Target:  5'- uGGcACgGCCGcGCCAGCcGCCGCAcCCGCg -3'
miRNA:   3'- -CC-UG-CGGC-UGGUUGcUGGCGUuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 23979 0.66 0.894323
Target:  5'- uGGcUGCCGccagcguCCAAUGGCCGC-GCCGg -3'
miRNA:   3'- -CCuGCGGCu------GGUUGCUGGCGuUGGUg -5'
13114 3' -56.1 NC_003401.1 + 118106 0.66 0.886936
Target:  5'- uGGGgGCCGcgcgccACCAugGGCCcCAgauuuggGCCGCg -3'
miRNA:   3'- -CCUgCGGC------UGGUugCUGGcGU-------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125259 0.66 0.880691
Target:  5'- --cCGUCuGCCAAcuCGGCCGUGGCCGCc -3'
miRNA:   3'- ccuGCGGcUGGUU--GCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 42319 0.67 0.872816
Target:  5'- aGGCGCgucacguaauuugCGACCAGCGgguggagcgugGCCGCcACCAg -3'
miRNA:   3'- cCUGCG-------------GCUGGUUGC-----------UGGCGuUGGUg -5'
13114 3' -56.1 NC_003401.1 + 119889 0.67 0.858607
Target:  5'- cGGcCGCCG-CCGAguCGGuuGCcACCACc -3'
miRNA:   3'- -CCuGCGGCuGGUU--GCUggCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 13205 0.68 0.817822
Target:  5'- uGGAUGCUGACgGACGcCUGgucCAccGCCACg -3'
miRNA:   3'- -CCUGCGGCUGgUUGCuGGC---GU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 41533 0.68 0.782134
Target:  5'- cGGACGCgGGCCuGCG-CC-CcACCACc -3'
miRNA:   3'- -CCUGCGgCUGGuUGCuGGcGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125420 0.69 0.760608
Target:  5'- gGGGCcucguccucccaggGUgGGCCAACGGCCGguACCu- -3'
miRNA:   3'- -CCUG--------------CGgCUGGUUGCUGGCguUGGug -5'
13114 3' -56.1 NC_003401.1 + 118539 0.69 0.744306
Target:  5'- --cCGCCGGCguCAGCGucGCCGCAggccgaGCCGCa -3'
miRNA:   3'- ccuGCGGCUG--GUUGC--UGGCGU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 103885 0.71 0.633961
Target:  5'- cGACGuuGGCCGGCGAguugauugcguCCGUGuacGCCGCg -3'
miRNA:   3'- cCUGCggCUGGUUGCU-----------GGCGU---UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132370 0.72 0.612532
Target:  5'- cGGCGCCGGCCgGGCGccuccggGCC-CGGCCGCu -3'
miRNA:   3'- cCUGCGGCUGG-UUGC-------UGGcGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 10839 0.67 0.842857
Target:  5'- uGACGUCGcuuGCC-GCGGuuGCcGCCACg -3'
miRNA:   3'- cCUGCGGC---UGGuUGCUggCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 72072 0.66 0.907044
Target:  5'- -uAUG-CGACCAAaauUGACCGCAaagaauACCACg -3'
miRNA:   3'- ccUGCgGCUGGUU---GCUGGCGU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 50824 0.68 0.812627
Target:  5'- cGGuuGCCGAaaccaguuuucgcaaCCAcCGuCCGUGACCACg -3'
miRNA:   3'- -CCugCGGCU---------------GGUuGCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 118430 0.7 0.714877
Target:  5'- cGGugGCCGGgCAGaGGCCGgcCGGCCAa -3'
miRNA:   3'- -CCugCGGCUgGUUgCUGGC--GUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 1478 0.68 0.817822
Target:  5'- gGGACGUcuaCGGCCAGaGACCaGCGAagcaCACa -3'
miRNA:   3'- -CCUGCG---GCUGGUUgCUGG-CGUUg---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.