miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 125259 0.66 0.880691
Target:  5'- --cCGUCuGCCAAcuCGGCCGUGGCCGCc -3'
miRNA:   3'- ccuGCGGcUGGUU--GCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 133650 0.66 0.880691
Target:  5'- cGGACGCCcucgcACgCAGCuGGCCgGCAGCCc- -3'
miRNA:   3'- -CCUGCGGc----UG-GUUG-CUGG-CGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 935 0.66 0.880691
Target:  5'- cGGACGCCcucgcACgCAGCuGGCCgGCAGCCc- -3'
miRNA:   3'- -CCUGCGGc----UG-GUUG-CUGG-CGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 100786 0.66 0.880691
Target:  5'- uGACGUCacauCCGGCGAUCGCGGCgGg -3'
miRNA:   3'- cCUGCGGcu--GGUUGCUGGCGUUGgUg -5'
13114 3' -56.1 NC_003401.1 + 11841 0.66 0.880691
Target:  5'- aGGugGCCaccucgguGACCgucuaucgaggGugGACCGaGACCGCc -3'
miRNA:   3'- -CCugCGG--------CUGG-----------UugCUGGCgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 96552 0.66 0.880691
Target:  5'- uGugGaCCGuuugaACCAACGGCC-CGACCGg -3'
miRNA:   3'- cCugC-GGC-----UGGUUGCUGGcGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 125077 0.66 0.880691
Target:  5'- uGGCGcCCGuCCggUGACgugaugGCGGCCACg -3'
miRNA:   3'- cCUGC-GGCuGGuuGCUGg-----CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 22793 0.67 0.873543
Target:  5'- uGGACGCCGucaACCGugG-CCGagcACgGCg -3'
miRNA:   3'- -CCUGCGGC---UGGUugCuGGCgu-UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 69449 0.67 0.873543
Target:  5'- -uAUGCgGGCCAGgGGCCGCAgaugucgaACCGg -3'
miRNA:   3'- ccUGCGgCUGGUUgCUGGCGU--------UGGUg -5'
13114 3' -56.1 NC_003401.1 + 23549 0.67 0.873543
Target:  5'- uGGCGCUGGCgAAgauagUGGCCGCAGagCACg -3'
miRNA:   3'- cCUGCGGCUGgUU-----GCUGGCGUUg-GUG- -5'
13114 3' -56.1 NC_003401.1 + 42319 0.67 0.872816
Target:  5'- aGGCGCgucacguaauuugCGACCAGCGgguggagcgugGCCGCcACCAg -3'
miRNA:   3'- cCUGCG-------------GCUGGUUGC-----------UGGCGuUGGUg -5'
13114 3' -56.1 NC_003401.1 + 23800 0.67 0.866179
Target:  5'- cGGCGCC-ACCugcCGGCCGCucGCgGCg -3'
miRNA:   3'- cCUGCGGcUGGuu-GCUGGCGu-UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 109043 0.67 0.866179
Target:  5'- -uACGCCucuaaCAACGACCggccgauaucguGCAGCCGCg -3'
miRNA:   3'- ccUGCGGcug--GUUGCUGG------------CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 122570 0.67 0.866179
Target:  5'- --cCGCCGcGCCggUGAgCCGCGGCCc- -3'
miRNA:   3'- ccuGCGGC-UGGuuGCU-GGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 122540 0.67 0.866179
Target:  5'- cGGuuCGCCGGCgAcaagguaagGgGGCCGCGGCgCGCg -3'
miRNA:   3'- -CCu-GCGGCUGgU---------UgCUGGCGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 119889 0.67 0.858607
Target:  5'- cGGcCGCCG-CCGAguCGGuuGCcACCACc -3'
miRNA:   3'- -CCuGCGGCuGGUU--GCUggCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125744 0.67 0.858607
Target:  5'- aGGCGCCacuGCUGGCGGCCuCGACgGCg -3'
miRNA:   3'- cCUGCGGc--UGGUUGCUGGcGUUGgUG- -5'
13114 3' -56.1 NC_003401.1 + 123601 0.67 0.858607
Target:  5'- -aAUGCCuaaaaCGGCGGCCGCuGCCACc -3'
miRNA:   3'- ccUGCGGcug--GUUGCUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 44995 0.67 0.857068
Target:  5'- aGugGUCGGauuuuaaaucggCAAUGGCgGCAACCACg -3'
miRNA:   3'- cCugCGGCUg-----------GUUGCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 18019 0.67 0.853965
Target:  5'- cGGAC-CCGuccugcccacccacACCGGCGGCCGCGuauugggggucuacGCCGa -3'
miRNA:   3'- -CCUGcGGC--------------UGGUUGCUGGCGU--------------UGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.