Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 5' | -53.7 | NC_003401.1 | + | 19784 | 0.66 | 0.958392 |
Target: 5'- --aUUCUCGgGGUCGCGcGCCU-CGCg -3' miRNA: 3'- gucAAGAGCaCCGGUGUcUGGAuGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 53016 | 0.66 | 0.950392 |
Target: 5'- cCGGUgucugcUgUCGUGcGCCGgGGGCCcgcagGCGCa -3' miRNA: 3'- -GUCA------AgAGCAC-CGGUgUCUGGa----UGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 119098 | 0.68 | 0.90223 |
Target: 5'- gGGUg--CGUuggcGGCCAC-GACCUugGCc -3' miRNA: 3'- gUCAagaGCA----CCGGUGuCUGGAugCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 41547 | 0.68 | 0.888812 |
Target: 5'- aCAGUUaaucagCUCGga--CGCGGGCCUGCGCc -3' miRNA: 3'- -GUCAA------GAGCaccgGUGUCUGGAUGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 44273 | 0.68 | 0.888116 |
Target: 5'- uCAGUUCUauauuuaaucUG-GGCCGCAGAUuucacguUUACGCg -3' miRNA: 3'- -GUCAAGA----------GCaCCGGUGUCUG-------GAUGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 109436 | 0.68 | 0.87445 |
Target: 5'- uGGUUCUCGgcugGGCU-UAGAUCU-CGCg -3' miRNA: 3'- gUCAAGAGCa---CCGGuGUCUGGAuGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 21295 | 0.69 | 0.859181 |
Target: 5'- -uGUgcgCGUGGaaccCCGCGGACCUcGCGCg -3' miRNA: 3'- guCAagaGCACC----GGUGUCUGGA-UGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 15900 | 0.7 | 0.817384 |
Target: 5'- aAGUUCUCccUGGCCGCGG-CCUccaGCa -3' miRNA: 3'- gUCAAGAGc-ACCGGUGUCuGGAug-CG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 20338 | 0.7 | 0.808463 |
Target: 5'- uGGUUCgCG-GGCUcCGGGCCUACGa -3' miRNA: 3'- gUCAAGaGCaCCGGuGUCUGGAUGCg -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 112851 | 0.71 | 0.731868 |
Target: 5'- gCAG-UCUaggGUGGCCACGG-CCU-CGCa -3' miRNA: 3'- -GUCaAGAg--CACCGGUGUCuGGAuGCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 64651 | 0.72 | 0.670352 |
Target: 5'- cCGGUUCUCccUGGCCGCAGuuUCUAgGCu -3' miRNA: 3'- -GUCAAGAGc-ACCGGUGUCu-GGAUgCG- -5' |
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13114 | 5' | -53.7 | NC_003401.1 | + | 27998 | 1.12 | 0.002588 |
Target: 5'- uCAGUUCUCGUGGCCACAGACCUACGCg -3' miRNA: 3'- -GUCAAGAGCACCGGUGUCUGGAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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