miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13115 3' -55.6 NC_003401.1 + 63666 0.71 0.677253
Target:  5'- cCGCCugCaAGAGGCGCGcgucacGCaGGGACu -3'
miRNA:   3'- aGCGGugG-UCUUCGCGUu-----UG-CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 68956 0.68 0.812636
Target:  5'- gUCGUgACUGGAAGUaCuAGCGGGAUGa -3'
miRNA:   3'- -AGCGgUGGUCUUCGcGuUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 70766 0.69 0.761001
Target:  5'- aCGCCGCguGAauuAGUGCAGccgagcguuuacggcACGcGGACGg -3'
miRNA:   3'- aGCGGUGguCU---UCGCGUU---------------UGC-CCUGC- -5'
13115 3' -55.6 NC_003401.1 + 72553 0.83 0.160272
Target:  5'- -aGaCCACCAGAggcggaaucgcugccAGCGCGGACGGGGCGc -3'
miRNA:   3'- agC-GGUGGUCU---------------UCGCGUUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 73874 0.66 0.904129
Target:  5'- gUCGCCAguCCAG-AGCGCcccacgauuAGUGGGACu -3'
miRNA:   3'- -AGCGGU--GGUCuUCGCGu--------UUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 74766 0.66 0.910314
Target:  5'- cUGCCcCCGGGAGUGgAuAUGGGAg- -3'
miRNA:   3'- aGCGGuGGUCUUCGCgUuUGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 75096 0.69 0.766736
Target:  5'- cCGCCGCCuG-GGCGCuuGGCGGG-Ca -3'
miRNA:   3'- aGCGGUGGuCuUCGCGu-UUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 78045 0.67 0.877044
Target:  5'- cCGCgGCCAGccauuGCGUcucugcggauAAACGGGGCc -3'
miRNA:   3'- aGCGgUGGUCuu---CGCG----------UUUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 78528 0.66 0.916259
Target:  5'- cCGCCuggCGGAGGCGgCGAaccugGCGGGAg- -3'
miRNA:   3'- aGCGGug-GUCUUCGC-GUU-----UGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 90953 0.8 0.242887
Target:  5'- -gGCCACCAGggGCaGCAAAaacacCGGGGCu -3'
miRNA:   3'- agCGGUGGUCuuCG-CGUUU-----GCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 95030 0.7 0.7178
Target:  5'- gCGCCACCucuGGCGCAAACaGGuGCc -3'
miRNA:   3'- aGCGGUGGucuUCGCGUUUGcCC-UGc -5'
13115 3' -55.6 NC_003401.1 + 99000 0.66 0.910314
Target:  5'- aCGCCaggGCCAGcGAGCGUcuGauaGGGGCu -3'
miRNA:   3'- aGCGG---UGGUC-UUCGCGuuUg--CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 104938 0.69 0.747461
Target:  5'- aCGCCGCggggCAGAGGcCGCA-ACGuGGAUGg -3'
miRNA:   3'- aGCGGUG----GUCUUC-GCGUuUGC-CCUGC- -5'
13115 3' -55.6 NC_003401.1 + 105837 0.73 0.514223
Target:  5'- gCGCCuugGCCAGgcGCGCGGcggcAUGGGGCu -3'
miRNA:   3'- aGCGG---UGGUCuuCGCGUU----UGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 106215 0.7 0.7178
Target:  5'- aUGaCCACCAGAAGCGgCGgagucGACGaccGGGCGg -3'
miRNA:   3'- aGC-GGUGGUCUUCGC-GU-----UUGC---CCUGC- -5'
13115 3' -55.6 NC_003401.1 + 107639 0.66 0.893739
Target:  5'- cCGCCACCGGgcGCGgggccCAucgagccuaucaaugAAUGGGGCc -3'
miRNA:   3'- aGCGGUGGUCuuCGC-----GU---------------UUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 107725 0.72 0.615472
Target:  5'- -gGCCACCGGGGcaaCGCu--CGGGGCGg -3'
miRNA:   3'- agCGGUGGUCUUc--GCGuuuGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 109959 0.66 0.897706
Target:  5'- cCGCCccGCCuuuAGCGUAuACGGGAg- -3'
miRNA:   3'- aGCGG--UGGucuUCGCGUuUGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 112126 0.67 0.869706
Target:  5'- gUGCCuggauGCCGGucGCGUGGACuGGGGCc -3'
miRNA:   3'- aGCGG-----UGGUCuuCGCGUUUG-CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 117799 0.66 0.904129
Target:  5'- aUGCgCACCAuGGGUGCGAugGGcaccGGCGg -3'
miRNA:   3'- aGCG-GUGGUcUUCGCGUUugCC----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.