miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13115 3' -55.6 NC_003401.1 + 74766 0.66 0.910314
Target:  5'- cUGCCcCCGGGAGUGgAuAUGGGAg- -3'
miRNA:   3'- aGCGGuGGUCUUCGCgUuUGCCCUgc -5'
13115 3' -55.6 NC_003401.1 + 132804 0.66 0.916259
Target:  5'- -gGCCccccucCCGGcGGCGCGGAgaccaccuuuCGGGGCGg -3'
miRNA:   3'- agCGGu-----GGUCuUCGCGUUU----------GCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 23937 0.67 0.845609
Target:  5'- cCGCCaACC---GGCGCGgcccucggugauuGACGGGACa -3'
miRNA:   3'- aGCGG-UGGucuUCGCGU-------------UUGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 7438 0.68 0.821351
Target:  5'- uUCGCCAgCAGAuggGGCGagaaAGACGcGGCGu -3'
miRNA:   3'- -AGCGGUgGUCU---UCGCg---UUUGCcCUGC- -5'
13115 3' -55.6 NC_003401.1 + 72553 0.83 0.160272
Target:  5'- -aGaCCACCAGAggcggaaucgcugccAGCGCGGACGGGGCGc -3'
miRNA:   3'- agC-GGUGGUCU---------------UCGCGUUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 17631 0.75 0.429331
Target:  5'- gUCGCCGCCGGAAuC-C-AACGGGGCGa -3'
miRNA:   3'- -AGCGGUGGUCUUcGcGuUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132651 0.75 0.447504
Target:  5'- gCGCCGCCGGGcucGGC-CGGAcCGGGGCGc -3'
miRNA:   3'- aGCGGUGGUCU---UCGcGUUU-GCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132538 0.72 0.615472
Target:  5'- -aGCgGCCcGgcGCGCGGcGCGGGGCGg -3'
miRNA:   3'- agCGgUGGuCuuCGCGUU-UGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 118338 0.71 0.636101
Target:  5'- cCGCCGCCGGGGuCGCccGCGGGuCa -3'
miRNA:   3'- aGCGGUGGUCUUcGCGuuUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 63666 0.71 0.677253
Target:  5'- cCGCCugCaAGAGGCGCGcgucacGCaGGGACu -3'
miRNA:   3'- aGCGGugG-UCUUCGCGUu-----UG-CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 118267 0.7 0.687469
Target:  5'- uUUGCCGCCcGggGuCGCcGGCGGGuCa -3'
miRNA:   3'- -AGCGGUGGuCuuC-GCGuUUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 106215 0.7 0.7178
Target:  5'- aUGaCCACCAGAAGCGgCGgagucGACGaccGGGCGg -3'
miRNA:   3'- aGC-GGUGGUCUUCGC-GU-----UUGC---CCUGC- -5'
13115 3' -55.6 NC_003401.1 + 127705 0.69 0.737664
Target:  5'- -gGCCACCuGGGAGCcCuggucucGCGGGGCGg -3'
miRNA:   3'- agCGGUGG-UCUUCGcGuu-----UGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 18183 0.69 0.757155
Target:  5'- -gGCCGCCGGuguGgGUggGCaGGACGg -3'
miRNA:   3'- agCGGUGGUCuu-CgCGuuUGcCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 70766 0.69 0.761001
Target:  5'- aCGCCGCguGAauuAGUGCAGccgagcguuuacggcACGcGGACGg -3'
miRNA:   3'- aGCGGUGguCU---UCGCGUU---------------UGC-CCUGC- -5'
13115 3' -55.6 NC_003401.1 + 75096 0.69 0.766736
Target:  5'- cCGCCGCCuG-GGCGCuuGGCGGG-Ca -3'
miRNA:   3'- aGCGGUGGuCuUCGCGu-UUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 17023 0.69 0.767688
Target:  5'- cUCGCCagcuuuugguacaccGCCAGGuggggcagguugguGGUcuuguaaucGCAGACGGGGCGg -3'
miRNA:   3'- -AGCGG---------------UGGUCU--------------UCG---------CGUUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 11242 0.68 0.794714
Target:  5'- cUCGaaaCACUGGGccAGCGCGAcguugGCGGGGCc -3'
miRNA:   3'- -AGCg--GUGGUCU--UCGCGUU-----UGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 28200 1.09 0.002956
Target:  5'- cUCGCCACCAGAAGCGCAAACGGGACGu -3'
miRNA:   3'- -AGCGGUGGUCUUCGCGUUUGCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.