miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13115 3' -55.6 NC_003401.1 + 28200 1.09 0.002956
Target:  5'- cUCGCCACCAGAAGCGCAAACGGGACGu -3'
miRNA:   3'- -AGCGGUGGUCUUCGCGUUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 72553 0.83 0.160272
Target:  5'- -aGaCCACCAGAggcggaaucgcugccAGCGCGGACGGGGCGc -3'
miRNA:   3'- agC-GGUGGUCU---------------UCGCGUUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 90953 0.8 0.242887
Target:  5'- -gGCCACCAGggGCaGCAAAaacacCGGGGCu -3'
miRNA:   3'- agCGGUGGUCuuCG-CGUUU-----GCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 132653 0.76 0.377536
Target:  5'- gCGCCGCCGGGAGgGgGGcCGGGGCc -3'
miRNA:   3'- aGCGGUGGUCUUCgCgUUuGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 17631 0.75 0.429331
Target:  5'- gUCGCCGCCGGAAuC-C-AACGGGGCGa -3'
miRNA:   3'- -AGCGGUGGUCUUcGcGuUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132651 0.75 0.447504
Target:  5'- gCGCCGCCGGGcucGGC-CGGAcCGGGGCGc -3'
miRNA:   3'- aGCGGUGGUCU---UCGcGUUU-GCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 126120 0.73 0.514223
Target:  5'- -aGCCACugCAGggGCGUuuccucuGACGGGAUGc -3'
miRNA:   3'- agCGGUG--GUCuuCGCGu------UUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 105837 0.73 0.514223
Target:  5'- gCGCCuugGCCAGgcGCGCGGcggcAUGGGGCu -3'
miRNA:   3'- aGCGG---UGGUCuuCGCGUU----UGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 57913 0.72 0.615472
Target:  5'- gUCGUgACCcgucuuGAGGCGCAuuUGGGACu -3'
miRNA:   3'- -AGCGgUGGu-----CUUCGCGUuuGCCCUGc -5'
13115 3' -55.6 NC_003401.1 + 107725 0.72 0.615472
Target:  5'- -gGCCACCGGGGcaaCGCu--CGGGGCGg -3'
miRNA:   3'- agCGGUGGUCUUc--GCGuuuGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 132538 0.72 0.615472
Target:  5'- -aGCgGCCcGgcGCGCGGcGCGGGGCGg -3'
miRNA:   3'- agCGgUGGuCuuCGCGUU-UGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 119844 0.71 0.636101
Target:  5'- cCGCCACCAGGgacgGGgGCAGACcgccGGugGc -3'
miRNA:   3'- aGCGGUGGUCU----UCgCGUUUGc---CCugC- -5'
13115 3' -55.6 NC_003401.1 + 118338 0.71 0.636101
Target:  5'- cCGCCGCCGGGGuCGCccGCGGGuCa -3'
miRNA:   3'- aGCGGUGGUCUUcGCGuuUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 14235 0.71 0.677253
Target:  5'- cCGCCugccuccgaacGCCAGggGC--AGGCGGGAUGa -3'
miRNA:   3'- aGCGG-----------UGGUCuuCGcgUUUGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 63666 0.71 0.677253
Target:  5'- cCGCCugCaAGAGGCGCGcgucacGCaGGGACu -3'
miRNA:   3'- aGCGGugG-UCUUCGCGUu-----UG-CCCUGc -5'
13115 3' -55.6 NC_003401.1 + 118267 0.7 0.687469
Target:  5'- uUUGCCGCCcGggGuCGCcGGCGGGuCa -3'
miRNA:   3'- -AGCGGUGGuCuuC-GCGuUUGCCCuGc -5'
13115 3' -55.6 NC_003401.1 + 132235 0.7 0.697638
Target:  5'- cCGCCGCCGGGccgcGGCcgccaucuuGCGccCGGGGCGa -3'
miRNA:   3'- aGCGGUGGUCU----UCG---------CGUuuGCCCUGC- -5'
13115 3' -55.6 NC_003401.1 + 106215 0.7 0.7178
Target:  5'- aUGaCCACCAGAAGCGgCGgagucGACGaccGGGCGg -3'
miRNA:   3'- aGC-GGUGGUCUUCGC-GU-----UUGC---CCUGC- -5'
13115 3' -55.6 NC_003401.1 + 95030 0.7 0.7178
Target:  5'- gCGCCACCucuGGCGCAAACaGGuGCc -3'
miRNA:   3'- aGCGGUGGucuUCGCGUUUGcCC-UGc -5'
13115 3' -55.6 NC_003401.1 + 28161 0.69 0.737664
Target:  5'- gCGCgACgGGcGGUGCGuacGAUGGGACGg -3'
miRNA:   3'- aGCGgUGgUCuUCGCGU---UUGCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.