miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13115 5' -57.1 NC_003401.1 + 74487 0.66 0.872381
Target:  5'- gCCGACGAGaCCGUGUcacUCCuGGa-- -3'
miRNA:   3'- aGGCUGCUCgGGCACAa--AGGuCCgcu -5'
13115 5' -57.1 NC_003401.1 + 11773 0.66 0.841678
Target:  5'- gUCGACGGGCCCGgcguUGgcUUCGcGGUGGu -3'
miRNA:   3'- aGGCUGCUCGGGC----ACaaAGGU-CCGCU- -5'
13115 5' -57.1 NC_003401.1 + 27708 0.66 0.841678
Target:  5'- gUCCGcGCGGGCCCcgGUGgaggCCAGcGCa- -3'
miRNA:   3'- -AGGC-UGCUCGGG--CACaaa-GGUC-CGcu -5'
13115 5' -57.1 NC_003401.1 + 127363 0.66 0.841678
Target:  5'- aUCCaACGGGCCCGg--UUCC-GGCu- -3'
miRNA:   3'- -AGGcUGCUCGGGCacaAAGGuCCGcu -5'
13115 5' -57.1 NC_003401.1 + 107364 0.66 0.836803
Target:  5'- gUCCGGuuCGGGCCCGUGagacacaucuugugUUUuuGGCGAu -3'
miRNA:   3'- -AGGCU--GCUCGGGCACa-------------AAGguCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 119660 0.66 0.833516
Target:  5'- gUCCGACGAuacGCCCGagggGUUUgcaaaCGGGCu- -3'
miRNA:   3'- -AGGCUGCU---CGGGCa---CAAAg----GUCCGcu -5'
13115 5' -57.1 NC_003401.1 + 101302 0.66 0.83269
Target:  5'- aCgGGCGAGCCguccgagaagcggCGgcccUCCAGGCGAu -3'
miRNA:   3'- aGgCUGCUCGG-------------GCacaaAGGUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 119591 0.67 0.790145
Target:  5'- cCCGGuguugcugGAGgCCGUGUUUCUcguuGGGCGAu -3'
miRNA:   3'- aGGCUg-------CUCgGGCACAAAGG----UCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 132499 0.67 0.781015
Target:  5'- gCCG-CGGGCCCGggccggCgGGGCGGa -3'
miRNA:   3'- aGGCuGCUCGGGCacaaa-GgUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 133711 0.69 0.693989
Target:  5'- gCCGG-GuGCCCGgcggUCCGGGCGGg -3'
miRNA:   3'- aGGCUgCuCGGGCacaaAGGUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 118006 0.69 0.68193
Target:  5'- aCCGACGGuGCCCGUGgugauauguuucagUgacccucggaugacCCGGGCGAc -3'
miRNA:   3'- aGGCUGCU-CGGGCACaa------------A--------------GGUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 32312 0.7 0.662724
Target:  5'- aUCCGAgGuGCCCGccuaaaagggcggUGgugCCGGGCGGu -3'
miRNA:   3'- -AGGCUgCuCGGGC-------------ACaaaGGUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 11077 0.7 0.653592
Target:  5'- cCCGccaacgucGCGcuGGCCCaGUGUUUCgAGGCGGc -3'
miRNA:   3'- aGGC--------UGC--UCGGG-CACAAAGgUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 109653 0.7 0.633258
Target:  5'- cUCCGACG-GCCUcgGUGcgUUgAGGCGAa -3'
miRNA:   3'- -AGGCUGCuCGGG--CACaaAGgUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 23785 0.71 0.572473
Target:  5'- gCCGcucGCGGcGCCCGUGUUUuuggccugcugCCAGGUGGc -3'
miRNA:   3'- aGGC---UGCU-CGGGCACAAA-----------GGUCCGCU- -5'
13115 5' -57.1 NC_003401.1 + 125160 0.73 0.475048
Target:  5'- gUCGGCGuuGCCCGUGUgguagUUCAgGGCGAu -3'
miRNA:   3'- aGGCUGCu-CGGGCACAa----AGGU-CCGCU- -5'
13115 5' -57.1 NC_003401.1 + 28166 1.09 0.002045
Target:  5'- uUCCGACGAGCCCGUGUUUCCAGGCGAg -3'
miRNA:   3'- -AGGCUGCUCGGGCACAAAGGUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.